EGAF00005797562 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797562
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	76151367
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	5360	0.0	9.172528	58-59
GATCGGA	12620	0.0	8.392652	1
ATCGGAA	14470	0.0	7.7793226	2
GCCGTAT	6930	0.0	7.5057545	58-59
CGAGTAA	7575	0.0	7.242496	32-33
CGTATCA	7275	0.0	6.953938	60-61
TCGAGTA	8665	0.0	6.1121674	32-33
AGAGCGT	18940	0.0	5.9930577	8
GTCGAGT	8975	0.0	5.927482	30-31
GAGCGTC	19650	0.0	5.9214854	9
GCGTCGT	8735	0.0	5.8449984	10-11
CCGTATC	9080	0.0	5.545417	60-61
AAGAGCG	22540	0.0	5.3307676	7
AGCGTCG	10615	0.0	5.2124844	10-11
TCGCCGT	9970	0.0	5.19338	56-57
GTGTCGA	10980	0.0	5.018093	28-29