EGAF00005797574 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797574
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	79017183
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	13315	0.0	9.065875	1
ATCGGAA	15475	0.0	8.167589	2
CGCCGTA	6325	0.0	7.659689	58-59
CGAGTAA	8015	0.0	7.5854673	32-33
GCCGTAT	7155	0.0	7.2690225	58-59
CGTATCA	7475	0.0	6.83078	60-61
GTCGAGT	9120	0.0	6.2757683	30-31
TCGAGTA	9245	0.0	6.1909323	32-33
AGAGCGT	20410	0.0	5.8653107	8
GCGTCGT	9775	0.0	5.685872	10-11
GAGCGTC	21410	0.0	5.5912914	9
CCGTATC	9300	0.0	5.490331	60-61
AAGAGCG	24760	0.0	5.218639	7
TCGTGTA	11350	0.0	5.147519	14-15
GTGTCGA	11310	0.0	5.039533	28-29
AGCGTCG	12065	0.0	5.0200825	10-11