FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68527105
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA56250.011.18859958-59
GATCGGA136350.010.1383641
GCCGTAT64900.09.84373658-59
ATCGGAA147450.09.504222
CGTATCA70050.08.95052760-61
CGAGTAA77150.08.65038532-33
GTCGAGT87000.08.18954530-31
TCGAGTA85950.07.79234632-33
AGAGCGT186400.07.51812128
CCGTATC85150.07.419075560-61
GAGCGTC198600.06.98444279
GCGTCGT98100.06.82776510-11
TCGCCGT99500.06.754842356-57
AAGAGCG223550.06.63004267
GTGTCGA100850.06.617429328-29
AGCGTCG112000.06.21366810-11
TCGGAAG249400.06.17139533
CGTCGTG114100.06.11977712-13
TCGTGTA108750.06.005760714-15
TGTCGAG115700.05.829653730-31
Produced by FastQC (version 0.11.5)