FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74070419
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA135450.013.0448211
ATCGGAA153250.011.684682
CGCCGTA63800.011.4657458-59
CGAGTAA82600.010.37970132-33
GCCGTAT76300.09.96087558-59
CGTATCA79150.09.33221860-61
TCGAGTA89500.09.15490232-33
GTCGAGT92000.09.13843430-31
GCGTCGT94500.08.84568710-11
AGAGCGT195100.08.6663838
GAGCGTC204750.08.3506379
AAGAGCG231800.07.9293357
CCGTATC99250.07.63370960-61
TCGGAAG255500.07.5847773
CGTCGTG114500.07.425195712-13
TCGTGTA109550.07.370858714-15
AGCGTCG116450.07.34148110-11
GTGTCGA113450.07.28500628-29
TCGCCGT107850.06.826882456-57
GTCGTGT126850.06.608678312-13
Produced by FastQC (version 0.11.5)