FastQCFastQC Report
Sun 24 Jul 2022
EGAF00005797711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45123241
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG535470.11866833767547857No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG511270.11330524773253765No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT460910.10214470188433494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)