FastQCFastQC Report
Sun 24 Jul 2022
EGAF00005797718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43664596
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA988510.22638707111821213No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTTCACCATCTCGTAT968150.2217242545883168TruSeq Adapter, Index 16 (97% over 38bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT575740.13185510751089968No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTTCACCATCGCGTAT569730.13047870636430484TruSeq Adapter, Index 16 (97% over 38bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT488990.11198775319025052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)