FastQCFastQC Report
Thu 21 Jul 2022
EGAF00005797724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43377063
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTGCCTAGATCTCGTAT932730.21502838954310946TruSeq Adapter, Index 10 (97% over 37bp)
CTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGC457720.10552120598851977No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT446520.1029391962291223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)