FastQCFastQC Report
Sun 24 Jul 2022
EGAF00005797744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43643259
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGC822190.18838877270828927No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT694680.1591723477845685No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTCACGAATCTCGTAT448290.10271689380483708TruSeq Adapter, Index 9 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)