FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49695882
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA1002760.20177929430853042No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG828010.1666154149351852No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG799100.16079803151496538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)