FastQCFastQC Report
Fri 24 Feb 2023
EGAF00005798040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54865177
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1749430.31885981157046117No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1131930.206311190794117No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG735990.13414519741729802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)