FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47322354
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT863990.18257544838111814No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG809670.17109672946531782No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG801960.1694674783084544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)