FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42921872
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT2262550.527132181000866No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG723160.16848286579858401No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG672030.15657052423063No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA607000.1414197404996688No Hit
CTCTGCTCCAGCCGCAGGGTGAAGTTTGCCACCTGGACCGTGATCACCCTG496910.11577081260575028No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGC431040.10042432445630516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)