FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51168262
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG841840.1645238605133784No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA584280.11418797066040665No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG568570.11111770808240468No Hit
CCGCCATCTTCCAGTAATTCGCCAAAATGACGAACACAAAGGGAAAGAGGA512670.10019296727334613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)