FastQCFastQC Report
Fri 24 Feb 2023
EGAF00005798212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58834021
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG779400.13247437226838532No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT596190.1013342263313942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)