FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50995217
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA1047160.20534474831237606No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1002620.1966105958525483No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG789090.15473804141278583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)