FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47890307
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA689780.14403332181604098No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG644190.13451365012130742No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG540950.11295605183737911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)