FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48914048
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1287860.2632904150562227No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAAA660320.134995983158049No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGA563620.11522661138166279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)