FastQCFastQC Report
Wed 22 Feb 2023
EGAF00005798417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45621510
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG754610.165406625076636No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA549800.12051332803320189No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG548440.12021522303843077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)