FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005798472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences359418640
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAAACA1939300.018.41031310
CTCGAAA1063000.018.4040471
GACTAAC1365200.018.3618471
CCGTGGA1748250.017.9548931
GCTAAAC2000000.017.8720479
TGACTAG1348850.017.7614331
ACTTTAG1599550.017.739693
GAACCTA1285750.017.5777761
TGGAAGA804900.017.574084
TCGAAAA622050.017.5119782
GAGAACG854250.017.48299210
TCGAGAA855400.017.4782688
GGCTCGA1057850.017.4652141
AAGGAAG781600.017.43174210
CTTAACT1362500.017.39571
CGAGCAC1148600.017.3850351
TGAGCCG1075150.017.3500211
TAGCTAA1526900.017.2846577
TAAGGAT1556800.017.2710199
AAGCTAA850450.017.2697567
Produced by FastQC (version 0.11.5)