FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005798480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365892371
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACTAAC1178200.018.5255971
CTCGAAA985450.018.1949141
CGGACTG1513200.018.0598951
AGGGTGA1725850.018.0047661
GAATGAA878000.017.8008081
CGCGAAA930600.017.7948310
GGGAGAT1405750.017.7675271
ATGCGAT1189350.017.7553831
GATGAAA702850.017.7279531
TGCCAAA1095100.017.7112561
GCGCGAT943650.017.693941
CGCTGGA1375450.017.664381
ACGCCGA1634800.017.6506081
GAACCTA1327750.017.6042371
TGACTAG1205700.017.5807341
GAAATGA1490500.017.5488111
TGACAAC961600.017.3122221
AGACTAA558400.017.2287488
AAGCTAA731600.017.200037
CAATGGA1365500.017.1938618
Produced by FastQC (version 0.11.5)