FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005798485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences360875445
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA1222000.035.827089
GGTATCA1580450.027.4781768
ATCAACG1099050.026.36708510-11
CAACGCA1207400.025.34568612-13
AAGCAGT2067150.024.8121131
GTGGTAT1733750.024.2266966
ACGACGC242650.023.1607195
TCAACGC1207100.022.40873112-13
TGGTATC1867300.022.3856247
AACGCAG1610600.018.32387214-15
AGCAGTG2788050.018.3085062
AGAGTAC1264050.017.78661318-19
CAGTGGT2496850.017.4997774
ACGCAGA1784050.017.21263114-15
CGCAGAG1792700.015.52050316-17
AGTGGTA2992650.015.121695
CTACACG420550.014.0163721
CACGACG422600.013.4521074
GCAGTGG3667050.013.4066833
TACACGA470850.012.316252
Produced by FastQC (version 0.11.5)