FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005798530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences358608215
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGACT2122600.019.1130031
CAATGGA2753800.018.5430628
ACTGAAC1295500.018.4933221
GACTAAC1345900.018.465191
ACTGATG1507450.018.167681
TACGGAT1487750.017.7686271
GGGATGA1190150.017.7527891
CTAAGAC982750.017.5595421
CTCGAAA747350.017.5364461
GATGAAA803650.017.5258481
AAGAAGG732500.017.5003497
TACTATC1506600.017.49228910
GCGCGAT882850.017.479741
GGGAGAT1001400.017.4708351
GTATGAA1122500.017.4695668
ACACTGA1556950.017.4646031
CATGACA1455800.017.3859581
GAATGAA874850.017.3403151
TGACAAC934350.017.3213521
GCGACTA990250.017.2782462
Produced by FastQC (version 0.11.5)