FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005798531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences358608215
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA1068050.030.685479
ACGACGC188250.028.0108285
CAACGCA973000.025.31909412-13
ATCAACG981600.023.87489710-11
TCAACGC959100.022.34850712-13
AAGCAGT1774800.021.873851
GGTATCA1456800.021.846828
GTGGTAT1540400.020.3298856
ACGCAGA1305550.018.83279614-15
TGGTATC1746100.017.6210827
CGCAGAG1337100.016.27473816-17
CTACACG356100.015.8215751
AACGCAG1507600.015.73528314-15
CACGACG347200.015.2551444
AGAGTAC1257050.014.82778218-19
AGCAGTG2675150.014.3160142
GCAGTGG2648150.013.4719413
TACACGA427050.013.1022292
CGACGCT424500.012.6277136
GCAGAGT1578850.012.34522816-17
Produced by FastQC (version 0.11.5)