FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005798547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366673247
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA949650.027.1649939
CAACGCA763800.023.77024512-13
ATCAACG737350.023.73396510-11
TCAACGC733650.021.99812312-13
ACGACGC222900.020.7587435
GGTATCA1288600.019.8814148
AAGCAGT1777700.017.3407211
GTGGTAT1456400.017.2466476
TGGTATC1659900.015.179057
ACGCAGA1318950.014.06162614-15
AGAGTAC1065850.013.65932518-19
AGCAGTG2317300.013.1126252
CTACACG370550.013.0174611
AACGCAG1430650.012.61333114-15
TACACGA420950.011.3491482
CGCAGAG1517650.011.12502516-17
CACGACG475200.09.9812844
TATCAAC1490400.09.77932210-11
CGACGCT472550.09.7723526
CAGTGGT2746700.09.7630844
Produced by FastQC (version 0.11.5)