FastQCFastQC Report
Thu 16 May 2024
EGAF00005798572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005798572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369206717
Total Bases9.4 Gbp
Sequences flagged as poor quality0
Sequence length8-26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACC12122520.328339638522882No Hit
CCACCTACTAAGAACGGCCATGCACC8206800.2222819797723236No Hit
CCTCTATATAAATGCGTAGGGGTTTT6542560.17720587678257219No Hit
TTCGGTCTTGATTAATGAAAACATTC6105830.16537700206575603No Hit
ACGCCAGAGTCTCGTTCGTTATCGG5772460.15634764304680837No Hit
CGTTCGTTATCGGAATTAACCAGAC4403350.1192651649401059No Hit
CCACCAACTAAGAACGGCCATGCACC4264210.11549654444667105No Hit
GTCTTCGAACCTCCGACTTTCGTTCT4212000.11408243149595786No Hit
CTGGTCTGTCTTGCGCCGGTCCA3922630.10624481677563846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)