EGAF00005800604 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005800604
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25099235
Sequences flagged as poor quality	0
Sequence length	65
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTGGTCAATCTCGTATGCCGTCTTCTGCTTG	434681	1.7318495962127929	TruSeq Adapter, Index 25 (97% over 37bp)

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	47245	57.80534	1
TATGCCG	47450	57.262695	48
CTCGTAT	47350	57.186512	44
ATCGGAA	47985	57.05931	2
TCTCGTA	47485	57.013554	43
CGTATGC	47725	56.998684	46
TGCCGTC	47930	56.733555	50
ACACGTC	48245	56.694115	13
CGTCTGA	48155	56.683697	16
ATGCCGT	47960	56.66731	49
TCGGAAG	48265	56.66451	3
TCGTATG	48200	56.46566	45
ATCTCGT	47930	56.453445	42
GCCGTCT	48175	56.438904	51
CGGAAGA	48655	56.18	4
ACGTCTG	48625	56.154	15
CACGTCT	49190	55.670914	14
CGTCTTC	48830	55.655735	53
CCGTCTT	49000	55.498653	52
GCACACG	49775	55.028473	11