FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005800650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005800650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17521540
Sequences flagged as poor quality0
Sequence length65
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGATTCTTCGCTGACGCCTGAGCTTGTTGTGGTTGCAGGTGAGAGTGTTGCATCTGGTGATC341220.194743156138102No Hit
CTGGATTCTTCGCTGACGCCTGAGCTTGTTGTGGTTGCAGGTGAGAGTGTTGCATCTGGTGATCT279470.1595008201333901No Hit
GTGCGTTGAGCCTGGTCGGCTGTGGGAGGTGGTGGATTCTTCACTGACGCCTGAGCTTGTCGTGC211550.12073710415865273No Hit
GGCTAGTGTAGAAGGTGGTTGATTTCTCACTGAGGCTTGGTGTTGTGGGACTGCCGGGTAAAGTT205300.11717006610149565No Hit
GTCAGGTAAGAGTGTGGTTTCAGTGTCGCCTGGGCTGCTGTGGAAGGTTGTAGATTGTTGACCAA200270.11429931387309564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)