EGAF00005800821 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005800821
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24389036
Sequences flagged as poor quality	0
Sequence length	65
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTGATCATCTCGTATGCCGTCTTCTGCTTG	762644	3.1269952613133216	TruSeq Adapter, Index 2 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	81300	58.14544	1
TATGCCG	82145	57.558537	48
ATCGGAA	82320	57.48672	2
CGTATGC	82335	57.45796	46
TCTCGTA	81950	57.414154	43
CTCGTAT	81980	57.404175	44
TCGGAAG	82885	57.2571	3
TCGTATG	82750	57.20866	45
ACACGTC	83320	57.17108	13
CGCTGAT	82705	57.121853	34
ATGCCGT	82810	57.11769	49
CGTCTGA	83425	57.070835	16
ATCTCGT	82565	56.979343	42
GTCACCG	82985	56.950916	29
CGGAAGA	83400	56.932934	4
TGCCGTC	83110	56.90441	50
ACCGCTG	83030	56.902287	32
CCGCTGA	83030	56.887608	33
GCCGTCT	83185	56.87072	51
CACCGCT	83270	56.74891	31