FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37845
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1721445.485533095521205No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG10632.8088254723213106No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT10042.6529264103580394No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG8212.1693750825736555No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA5151.360813845950588No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG5101.3476020610384463No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA3851.0173074382349057No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG2920.7715682388690712No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA2400.6341656757827983No Hit
CATAGAACTGAAACTAGGAAACATGTCTGATCAGCTGTCTATGTGTAGAA2370.6262386048355132No Hit
CATAGATCTCAAACAGCCTCTCCCAGAGACTTGGTCTCATAGAGAAGCTT2180.576033822169375No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT2040.5390408244153785No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT1850.48883604174924034No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG1840.48619368476681196No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGACACGATCTTGGC1690.4465583300303871No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC1670.44127361606553045No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAAGCTTTGAGAT1670.44127361606553045No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG1650.43598890210067376No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG1630.4307041881358171No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG1490.3937111903818206No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA1480.39106883339939225No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT1340.3540758356453957No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGATCATGGTGGGAGTATAC1290.34086405073325404No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACATTTATCGGGAGCCACAGA1230.3250099088386841No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAATGGCGTGATCTCAGC1160.30651340996168586No Hit
CATAGATCCCTGGCAAGAATTCCTCATGGTGGGAGTATACTGATAGCTCT1110.29330162504954416No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTAGAAGCTTTGAG1110.29330162504954416No Hit
CATAGACACAACGTTTGAGACTGCCTGAGATCCAGGGGGCACAGCAAGCT1090.2880169110846875No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT1080.2853745541022592No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAGGCAAGGGTAC1060.28008984013740257No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC1040.27480512617254593No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1030.2721627691901176No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA990.2615933412604043No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA940.24838155634826264No Hit
CATAGATCCCTGGCAAGAATTCCTCAGTGTAGAGGCAAGGGTACTATTTT940.24838155634826264No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA920.24309684238340598No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT880.2325274144536927No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA850.2246003435064077No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA830.21931562954155107No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA800.21138855859426608No Hit
CATAGAGATCTTCTCGGCTTAGCGGCAACACGCTCGGGTCCCCTTCCACA790.20874620161183774No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGTAGTGGTGTGACTATGGC790.20874620161183774No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA760.2008191306645528No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA750.19817677368212444No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA710.18760734575241114No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG690.1823226317875545No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTATAACCTGTGTATATTCTCCTG690.1823226317875545No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAACCTTCAGGTCA670.17703791782269784No Hit
CATAGATCTCAAACAGCCTCTCCCAGAAGCTTTGAGATTTGTGTCTGTTC600.15854141894569956No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA590.15589906196327125No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA590.15589906196327125No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGGTAATTCTGGCCTTGTTCTATG580.15325670498084293No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCAGAAGCTTTGAGATTTGTGTC560.14797199101598627No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA540.1426872770511296No Hit
CATAGAGGGCTATCCTTGCTCAGATCAGGAAAGTTGGAACCTATCAGTGT530.14004492006870128No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA510.13476020610384462No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA510.13476020610384462No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGCAATCATGGC510.13476020610384462No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT500.1321178491214163No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA500.1321178491214163No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAAACATTTTCTGGTCAGCTGT490.12947549213898796No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC480.12683313515655964No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT480.12683313515655964No Hit
CATAGACACAACGTTTGAGACTGCCTACGGTAGCAGAGACTTGATGCCCA480.12683313515655964No Hit
CATAGGGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA470.12419077817413132No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACTGCT460.12154842119170299No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTTAGGTCA460.12154842119170299No Hit
CATAGACGGGAAGAGTAAGACCACCCGTGCCATACCAAGAATAAGAACTA430.11362135024441802No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCTGCGCAGAGCCTTCAGGTCA430.11362135024441802No Hit
AATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA410.10833663627956137No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGCGCCTTCAGGTCA400.10569427929713304No Hit
CATAGAGGTGAGCGGCCGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA390.10305192231470472No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCTCAGTGTAGTATGCAGTCTGTG390.10305192231470472No Hit
GATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA380.1004095653322764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)