FastQCFastQC Report
Wed 8 May 2024
EGAF00005804141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178464
Total Bases26.7 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT171309.598574502420657No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG91845.146135915366685No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG81834.585238479469249No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG70893.9722296933835395No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA66463.7240003586157435No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA56293.154137529137529No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG54083.0303030303030303No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG45572.55345615922539No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC45492.548973462435001No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT39652.221736596736597No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC38402.151694459386767No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT36942.069885242962166No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC36222.029540971848664No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG29701.6642011834319528No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC27121.5196342119419042No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA23201.2999820692128385No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG21821.2226555495786264No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT19541.0948986910525371No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG19501.0926573426573427No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT18251.022615205307513No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG17000.9525730679576834No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT16080.9010220548682087No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT15480.8674018289402905No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTCCTAAATGTCTTTGTCCTTCTA13910.7794289044289044No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT13690.7671014882553344No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT12930.724515868746638No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT12740.7138694638694639No Hit
CATAGACCCCATGACTCAGCTCCTCACTCTCCCACCATTCAGACTCTATG10920.6118881118881119No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT10720.6006813699121392No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT10390.5821902456517841No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGCTGGAATAGTTGGACTCTATGT9980.5592164246010399No Hit
CATAGATGGGACAGCGACAATGACAGTGTAGCCCGTTCTCTCTGTTGTGT9620.539044289044289No Hit
CATAGAAGCATCCAGGTTTCTCATTTGTCAGACCCAGGCTACACATCTAT8700.4874932759548144No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTACGAATGAGGAAACAGGCACT7950.4454679935449167No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT7840.4393042854581316No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAGCCCGTTCTCTCTGTT7740.43370091447014525No Hit
CATAGACCAGTACGCCTTACCCCTTGGGCTGGTGTTTTCCTTGATCTATG7650.42865788058095755No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG7600.4258561950869644No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG7230.4051237224314147No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT7120.39896001434462974No Hit
CATAGATCTAGCCCATCACTTCAGCATACGAATGAGGAAACAGGCACTCT6920.387753272368657No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG6890.38607226107226106No Hit
CATAGATCTAGCCCATCACTTCAGCACACTGTCAGACCCAGGCTACACAT5690.3188318092164246No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG5410.30314237045006276No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGGGCTGGTGTTTTCCT5080.2846512461897077No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTAGCCCGTTCTCTCTGT4990.27960821230051996No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT4950.27736686390532544No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC4740.2655997848305541No Hit
CATAGATCTAGCCCATCACTTCAGCATAGATGCCTGGCCAACTGTTTTTT4740.2655997848305541No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG4730.2650394477317554No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT4620.25887573964497046No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGGGAGAAGAAATGTTGGTCTAT4470.2504706831629908No Hit
CATAGAGCAGCTTGAATTCTCCTCAGACCATGGAGAGAATAATCCGTCTA4160.2331002331002331No Hit
CATAGACCAGTTACCACAAGAAGCAATGAGCATGCCTTTGATAAAACATC4160.2331002331002331No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG3940.22077281692666306No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT3930.22021247982786443No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTCTGAGAAAAGATGCA3880.21741079433387125No Hit
CATAGACCAGTACGCCTTACCCCTTGTTACAAAAATTGGGAAGCGGTCTA3790.2123677604446835No Hit
CATAGACCAGTACGCCTTACCCCTTGTCAGACCCAGGCTACACATCTATG3770.21124708624708624No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGTTGTCTTTATGGTGT3700.20732472655549578No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGGTGGGTTGAGGGAGTC3540.19835933297471758No Hit
CATAGACCCTCTCTTACCCTTCCACCATTGGTGCTGGAATAGTTGGACTC3480.19499731038192578No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGATGGGAGTGTCTGC3200.1793078716155639No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACCATGTCGTCAGTGTACCAACA3140.1759458490227721No Hit
CATAGACCAGTACGCCTTACCCCTTGACACTGTCAGACCCAGGCTACACA2970.16642011834319528No Hit
CATAGACCAGTACGCCTTACCCCTTGTTGTCTTTATGGTGTCCTCATCTA2940.16473910704679937No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTACTGTCATTGTGGGTTTTAAC2880.16137708445400753No Hit
CATAGATCTCCTCTCTGTAATGCACCAACATGCTTTTAGTCACGTCTATG2850.1596960731576116No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG2840.15913573605881298No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTATGTGCTCGTATCTTG2840.15913573605881298No Hit
CATAGAACACGAAGATTTCAGATTAGCCTACACTGTCAGACCCAGGCTAC2840.15913573605881298No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTTGTTGTCTTTATGGTGT2830.15857539896001435No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGTGTACCCTGGGAGAAGAAA2760.1546530392684239No Hit
CATAGATCTAGCCCATCACTTCAGCAGAATGATGGGAGTGTCTGCTGGTC2730.15297202797202797No Hit
CATAGATGGCCCAGAATCCTTTGTAGACCATGGAGAGAATAATCCGTCTA2690.15073067957683342No Hit
CATAGACCCTCTCTTACCCTTCCACCATGCCTGGCCAACTGTTTTTTCTA2670.14961000537923613No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACCATGTCGTCAGTGTAGATCTC2670.14961000537923613No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCGTCAGTGTAGACCATGGAGAGA2650.14848933118163887No Hit
CATAGATGAAGGCAGAAAAGGAAGAACATCGGGTCCTAAATGTCTTTGTC2620.14680831988524295No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA2550.1428859601936525No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAACTGGCTTGATTGCAC2550.1428859601936525No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGTGTGACTGTTAATATAGAA2460.13784292630446476No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAACAACAACAAAACTCG2440.1367222521068675No Hit
CATAGACCCTCTCTTACCCTTCCACCATTCACTCTCCCACCATTCAGACT2430.13616191500806885No Hit
CATAGATCTAGCCCATCACTTCAGCATCTAGCCCGTTCTCTCTGTTGTGT2400.13448090371167293No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG2400.13448090371167293No Hit
CATAGATCTAGCCCATCACTTCAGCATATTTAGACCATGGAGAGAATAAT2400.13448090371167293No Hit
CATAGAACACGAAGATTTCAGATTAGCCTTCCTTTCAATAGCCTTTTAGG2360.1322395553164784No Hit
CATAGATCTAGCCCATCACTTCAGCATCATACCCTGGGAGAAGAAATGTT2330.13055854402008246No Hit
CATAGATGACATGGGAAATTATGCTGCTACCGTATCAATCCTGTGTTCAT2330.13055854402008246No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA2280.12775685852608928No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGCATAAAAACTGTCGGAGGTCTA2270.12719652142729065No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGTGTAACAACAACAAAACTC2230.1249551730320961No Hit
CATAGAGCAAGCCCTCTAAGCCTATCAATCCTGTGTTCATGGCTTCTATG2190.12271382463690157No Hit
CATAGACCCCATGACTCAGCTCCTCATTCTAAAAAAGAACGATGAAATAC2190.12271382463690157No Hit
CATAGAGCAAGCCCTCTAAGCCTATCAACACTGACGAATGAGGAAACAGG2170.1215931504393043No Hit
CATAGATCTAGCCCATCACTTCAGCACTCTCCCACCATTCAGACTCTATG1950.10926573426573427No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGCAGGCCCTTCA1930.108145060068137No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACTGTTAATATAGAAGAGACAC1920.10758472296933834No Hit
CATAGAGCAACCCCAGCAGTCTGAGAAAAGATGCAGTACAGCTCTATGTG1900.1064640487717411No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAACTATGATGAGCATGCCTTTG1880.1053433745741438No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTGCATAAAAACTGTCG1850.10366236327774789No Hit
CATAGATGACATGGGAAATTATGCTGCTAATGGTGGGTTGAGGGAGTCTT1810.10142101488255335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)