FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82194
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3447441.942234226342556No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG29793.6243521424921528No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG22362.720393216049833No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA21182.5768304255785095No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA19942.425967832201864No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA17412.118159476360805No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC12501.5207922719419908No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG11411.3881791858286494No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC11381.3845292843759884No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG8751.0645545903593936No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC8140.9903399274886244No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG7590.9234250675231769No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT4770.5803343309730636No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA4410.5365355135411344No Hit
CATAGATCACCTACACAGACAGCTTTCCCGACATGGTTCTACACATAGAT4240.5158527386427234No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA3630.4416380757719542No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA3450.4197386670559895No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC3420.4160887656033287No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA2940.35769034236075625No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT2650.32240796165170205No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA2620.3187580601990413No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTCACCAAGTCACCCAGCCTCTA2570.31267489111127333No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGCCATGGGTCCTTTTC2530.307808355841059No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT2510.3053750882059518No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCAGTTTTTCCAAATATAAGAT2420.29442538384796946No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA2350.2859089471250943No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC2280.27739251040221913No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGAGCATGTTGAGATGAATAATTG2190.2664428060442368No Hit
CATAGACACCTGGATCCTGTGTTGTCTTAGGTAGAGGAGTTTCAAACATC2160.262792904591576No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA2150.2615762707740224No Hit
CATAGAGAGGTCGCCCAGGTATTTCTTATAGCCAGTGTCTCCCCTCTATG2130.25914300313891525No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA2120.2579263693213617No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT2070.2518432002335937No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2050.2494099325984865No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1990.24211012969316495No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG1870.22751052388252183No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAAGTGCAGCTATATTGGAGGAAAA1870.22751052388252183No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1820.22142735479475387No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGTAGATTTGGACCTGCG1760.2141275518894323No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAAGGTAAGA1740.21169428425432515No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTCTACCGTAGGAGGGAAG1620.197094678443682No Hit
CATAGAACTTTGTGCCCCCAGTGTCTACCGTAGGGATTATCAGTAGTGCT1600.19466141080857485No Hit
CATAGATCATGGGACTTCAGCATGGCTAGTCCGTCACCCCTAATCTATGA1570.19101150935591407No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC1570.19101150935591407No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG1560.18979487553836047No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAACCACTTGAACATTGCCTT1520.18492834026814609No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT1460.17762853736282452No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT1440.17519526972771735No Hit
CATAGATGTGGCTATGCAGACTGAGTCTCTGCTACCGTAAGCATGTTGAG1420.17276200209261017No Hit
CATAGACCCTTCTCCATGCCACATCAGTGTAGGAAAGCAATCACCGCCAG1390.1691121006399494No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1390.1691121006399494No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1380.1678954668223958No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA1350.164245565369735No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1350.164245565369735No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG1350.164245565369735No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGCATGTTGAGATGAATAAT1290.15694576246441347No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA1270.15451249482930626No Hit
CATAGAGGTCGCAGCTACCCAGAAAGGGTTCCACACTCATGCAAAGCTGG1270.15451249482930626No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGCTGTCCAGGATAGCAGTGGGGC1270.15451249482930626No Hit
CATAGACCCTTCTCCATGCCACATCATCTATGACCATGGGTCCTTTTCAC1250.15207922719419908No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT1190.14477942428887752No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTCACTGACGACATGGTTCTACA1150.13991288901866317No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1150.13991288901866317No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA1130.13747962138355596No Hit
CATAGAAGGAGGGGAAACTGAGGCCAATCAGTGCAGCTATATTGGAGGAA1100.1338297199308952No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1100.1338297199308952No Hit
CATAGATGTGGCTATGCAGACTGAGTCTCTAGGAAAGCAATCACCGCCAG1070.13017981847823443No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGCCCTGGCCCTAGCCCTGCAAC1060.12896318466068085No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1040.12652991702557365No Hit
CATAGATCATGGGACTTCAGCATGGCCATGGGACTTCAGCATGTTGAGAT1030.12531328320802004No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGCATGTTGAGATGAATAATT1030.12531328320802004No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1030.12531328320802004No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1020.12409664939046645No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGAGTGCAGCTATATTGGAGGAAA990.12044674793780569No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAACGGGGGCAGATTAACAGGT990.12044674793780569No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTGACGACATGGTTCTACACAT970.1180134803026985No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC960.11679684648514489No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGGAAAGCAATCACCGCCAG950.1155802126675913No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGCTAGTCCGTCACCCCTAATCT940.11436357885003773No Hit
CATAGAAGGAGGGGAAACTGAGGCCATGGGTCCTTTTCACATCATCTATG930.11314694503248413No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGCTTGGTCTCAAGAATGAGG930.11314694503248413No Hit
CATAGAGGTCGCAGCTACCCAGAAAGACACTGACGCCATGGGTCCTTTTC930.11314694503248413No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA920.11193031121493054No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC910.11071367739737693No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTTCTTATA910.11071367739737693No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT900.10949704357982334No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCAAGA860.10463050830960896No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT840.1021972406745018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)