FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86416
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3727843.13784484354749No Hit
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG39114.525782262543973No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTAAAGTGCTGTACTT23272.692788372523607No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACCAAAAACAATACAAAAAT15991.8503517867061656No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT14441.6709868542862432No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA12591.4569061284947231No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG11761.3608591001666357No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCACAGC9631.114376967228291No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT7720.8933530827624514No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA7670.8875671172005184No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT6040.6989446398815035No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG5680.657285687835586No Hit
CATAGACACATGTAGGATGGGGTGGCTTCCCTTACACCTTCTGCCATGAT5330.6167839289020551No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAATACAAAAATTAG5040.5832253286428439No Hit
CATAGAGCTATCTGGCAAAAACCCATCTAAAAAAATACAAACATTAGCCA4520.523051286798741No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCCCAGCACTTT4300.49759303832623586No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTGACTGTGTTAATTTAAAAGA4150.4802351416404369No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAGTAATAGCACTTT3890.4501481207183855No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG3590.41543232734678764No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTATTATCCTAGCACTTT3470.4015460099981485No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCACAGCACTTT3380.39113127198666914No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACCGTATGCCATGATTGTAA3180.36798740973893723No Hit
CATAGAAGCATGGAAGACAAACAGCATGGCGGTGTTTGCAGATTTGGACC3060.3541010923902981No Hit
CATAGACACATGTAGGATGGGGTGGCCTCTCCTTCACTTTCTGCCATGAT3020.34947231994075173No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG2950.3413719681540456No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2770.3205424921310868No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAATATACAAAAATTAG2640.30549898167006106No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG2310.26731160896130346No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA2200.2545824847250509No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG2180.2522680985002777No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC2150.24879651916311793No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGATCTGCG2140.24763932605073136No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCATGCCTATAATTCCAGC2090.24185336048879835No Hit
CATAGATGAAAGACAAGCAGGGAAGCACACTGACGACATGGTTCCATGTG2040.2360673949268654No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACTCTGTTGCTCCTGCTCTTGCCA1930.22333827069061285No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTATAATTCCAGC1910.22102388446583965No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATAGGTCAAGGTGGGAGGATG1840.2129235326791335No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1840.2129235326791335No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1830.2117663395667469No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT1800.2082947602295871No Hit
CATAGAACCAAAAATGGCTAGGCATGTGGCTCACACCTGTAATCACAGCA1760.20366598778004072No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCGTGTCATCCCAGCCCTTT1670.19325124976856137No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG1660.1920940566561748No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1660.1920940566561748No Hit
CATAGACACATGTAGGATGGGGTGGCTGCTGGGCGGAGAGGCTCCTCACT1630.18862247731901502No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGTTTGCTTTGTCAAAGA1550.17936493241992224No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA1490.17242177374560266No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGC1440.1666358081836697No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCCTGTAATCCTAACACTTT1430.16547861507128309No Hit
CATAGAACCAAAAATGGCTAGGCATGTTGGCTCACACCTGTAATCACAGC1420.1643214219588965No Hit
CATAGAGCTATCTGGCAAAAACCCATCTTTACAAAATTAAAAAAATTAGC1380.1596926495093501No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG1370.15853545639696354No Hit
CATAGAGGTGTCCTTTCCCCACTTTACTCTGTATTTCTCCTTCCTGCCAT1360.15737826328457694No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGCCAGCAAGGGAACAAA1330.15390668394741713No Hit
CATAGAACCAAAAATGGCTAGGCATGGTGGCTCACACCTGTAATCACAGC1280.14812071838548418No Hit
CATAGAAAATAATGTGGCCGGGCATGGTAGCTCATGCCTGTAATCCCAGT1240.14349194593593778No Hit
CATAGACACATGTAGGATGGGGTGGCAGGGAGGACAGGGTCTGTGAAGTA1220.1411775597111646No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG1210.140020366598778No Hit
CATAGATCATGGGACTTCAGCATGGCTAGACCCAGACCCCCGGATCTGAC1200.1388631734863914No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1200.1388631734863914No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAGTTAATTAAAAAA1190.1377059803740048No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1190.1377059803740048No Hit
CATAGAGGTGTCCTTTCCCCACTTTACTCGGCACTTCTCCTTCCTGCCGC1170.13539159414923163No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA1160.13423440103684503No Hit
CATAGACTGGTCTCGAACTCCCAACCTCAGGGTGATCTGCCCACCTTTGC1140.13192001481207183No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATGAGGTCAAGGTGGGAGGAT1120.12960562858729863No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGTTTGCTTTGTTGAAGA1100.12729124236252545No Hit
CATAGAGGTGTCCTTTCCCCACTTTAATCTTATATGCTTTGTTGAAGATA1090.12613404925013885No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG1080.12497685613775227No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1080.12497685613775227No Hit
CATAGACACATGTAGGATGGGGTGGCTCACGTGTGTAATCTCAGCACTTT1070.12381966302536568No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGTTCACTCCTGTAATCCCAGC1050.12150527680059248No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT1040.12034808368820589No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAAAGGTAGGTAAATCCACAAAG1040.12034808368820589No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAATACAAATGTTAG1000.1157193112386595No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC990.11456211812627291No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG980.11340492501388633No Hit
CATAGAAAAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG980.11340492501388633No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG970.11224773190149971No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGC930.10761895945195334No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTGGTCTGTTCGGCCA870.10067580077763377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)