FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145452
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1659111.406512113961995No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG84325.797101449275362No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA76575.264279624893436No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG67974.673019277837362No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG66594.578142617495806No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC57763.9710694937161404No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG49553.406622115887028No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG36572.5142314990512333No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC35742.4571680004400074No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG34142.3471660754063195No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA33532.305227841487226No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT32122.2082886450512884No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT29592.0343481010917692No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA26881.84803234056596No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG24711.6988422297390207No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA24541.687154525204191No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC20011.3757115749525617No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT14210.9769545967054424No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG12610.8669526716717544No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT12490.8587025272942276No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT11670.8023265407144625No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT11080.76176333085829No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC10980.7548882105436845No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT10720.7370128977257102No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG10270.7060748563099855No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT9860.6778868630201029No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT9690.6661991584852734No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC9350.6428237494156148No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCCTGGGAGAAGAAATGTT8480.5830102026785469No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT8350.5740725462695597No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG8200.5637598657976515No Hit
CATAGACCAGTACGCCTTACCCCTTGTACGGTAACACGCACAAAGGCACT8200.5637598657976515No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT7570.5204466078156368No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT6840.4702582295190166No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG6540.4496328685752No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG6200.4262574595055414No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT6080.41800731512801476No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTATGGGTCATTGTGAGG5610.3856942496493688No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTTTACCTCTCAGTTAT4590.3155680224403927No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACGAATGAGGAAACAGGCAC4530.3114429502516294No Hit
CATAGATCTAGCCCATCACTTCAGCACTCTCCCACCATTCAGACTCTATG4480.30800539009432665No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGGGTTGAGGGAGTCTTCTCTATG4200.28875505321343126No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG4170.2866925171190496No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGGACTGTTAATATAGAAGA3790.26056705992354867No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTACGAATGAGGA3710.25506696367186427No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG3240.2227538981932184No Hit
CATAGATTCAGAGAAGGACAGCGTGGACTGTTAATATAGAAGAGACACAC3220.2213788741302973No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT3010.2069411214696257No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC2910.2000660011550202No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACCATGTCGTCAGTGTACCAACA2850.19594092896625692No Hit
CATAGAGCAACCCCAGCAGTCTGAGAAAAGATGCAGTACAGCTCTATGTG2630.1808156642741248No Hit
CATAGATCTCCTCTCTGTAATGCACCAACATGCTTTTAGTCACGTCTATG2580.17737810411682203No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA2570.1766905920853615No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACCCTTCAGCATCATTTCTATG2550.1753155680224404No Hit
CATAGAGCAAGCCCTCTAAGCCTATCACTCTCCCACCATTCAGACTCTAT2300.15812776723592661No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGGTGGGTTGAGGGAGT2140.1471275747325578No Hit
CATAGATTCCTCCAAAGACTGCAGGCCCTTCAGCATCATTTCTATGTGTA2140.1471275747325578No Hit
CATAGATCTAGCCCATCACTTCAGCACAGGCCCTTCAGCATCATTTCTAT2130.14644006270109727No Hit
CATAGACCTCCCATGGTTCCTGATGACCTCCCATGATTTACCATCACAAA2130.14644006270109727No Hit
CATAGATTCTTTCCTGGCTGTGGGTGTTGTTACAAAAATTGGGAAGCGGT2120.14575255066963672No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTAGCCCGTTCTCTCTGT2050.14093996644941287No Hit
CATAGAAGCATCCAGGTTTCTCATTTGTACACTGTCATTGTGGGTTTTAA1990.13681489426064958No Hit
CATAGACCTCCCATGGTTCCTGATGAGACCTCCCATGATTTACCATCACA1980.136127382229189No Hit
CATAGAGCAACAATGAAGGTGCACAAAAACTGTCATTGTGGGTTTTAACT1900.13062728597750461No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACGAAT1890.12993977394604406No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCAGGC1840.1265022137887413No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTCTTAGTGGGACAGCATCTGGGT1790.12306465363143854No Hit
CATAGATGCCACCACACCCAGTTAATTTTTGTATTTTTAGTAGAGATGGG1760.12100211753705689No Hit
CATAGAACTTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG1750.12031460550559635No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTAGACTGTTAATATAGAAGAGA1740.1196270934741358No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACCATGTCGTCAGTGTAGATCTC1730.11893958144267523No Hit
CATAGAGCAACAATGAAGGTGCACAAAAACTGTCGGAGGTCTATGTGTAG1720.11825206941121469No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAGCCCGTTCTCTCTGTT1690.11618953331683304No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTATGATGGGAGTGTCTGCTGGT1670.11481450925391196No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG1590.10931441300222754No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGCTTGGTCTCATAGACCTCCCATGA1570.10793938893930644No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTTGTGGAAAGTGCAATGAGTCTAT1560.10725187690784589No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG1540.10587685284492478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)