FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80895
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3627544.84207923851907No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG26483.273379071636071No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA20452.527968354039187No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG18182.2473576858891153No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA16342.019902342542802No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC14601.8048087026392237No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA13691.6923172013103405No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC9791.2102107670436986No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG9421.1644724643055815No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG9021.1150256505346436No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC8591.0618703257308857No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG4460.5513319735459546No Hit
CATAGATGTGCCTCTCCAACATTCATCTATGAGACCAAGTCTCTCTACCG3870.47839792323382163No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA3710.45861919772544657No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAGTTTTTCCAAATATAAG3130.386921317757587No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC3070.3795042956919464No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA2950.36467025156066507No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGCCATGGGTCCTTTTC2910.3597255701835713No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT2810.34736386674083686No Hit
CATAGAAGGAGGGGAAACTGAGGCCACAAAAATGTAAGGGAGACAGTGAC2700.333765992953829No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGAGCAGGCACATGGAAGCATATCG2400.2966808826256258No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT2360.29173620124853206No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA2350.29050003090425863No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT2240.27690215711725075No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAGTTTTTCCAAATATAAGAT2220.2744298164287039No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT2180.26948513505161015No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA2170.26824896470733667No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1960.2422893874775944No Hit
CATAGAACTTTGTGCCCCCAGTGTCTAGGAGGGAAGGAAGGGCAAACTCT1950.24105321713332098No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT1910.2361085357562272No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1870.23116385437913345No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAAGGGATTA1870.23116385437913345No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGGGATTATCAGTAGTGCT1860.22992768403486No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGGCCAAGTCTCTG1700.21014895852648494No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA1680.20767661783793806No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT1640.20273193646084428No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1640.20273193646084428No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTAGTGCAGCTATATTGGAGG1620.2002595957722974No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG1590.19655108473947708No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT1550.19160640336238335No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC1540.1903702330181099No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT1530.18913406267383645No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTGTAAGCATGTTGAGATGAATA1490.1841893812967427No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1380.17059150750973484No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA1370.1693553371654614No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC1360.16811916682118797No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG1340.16564682613264106No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA1330.16441065578836764No Hit
CATAGAAGATGGTCTGCTACACTGGTGACTTGGTCTCATAGATTAGGGGT1320.16317448544409419No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTTCTTATA1320.16317448544409419No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1290.15946597441127386No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1270.15699363372272698No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA1250.1545212930341801No Hit
CATAGACCCTTCTCCATGCCACATCATGAGGAAAGCAATCACCGCCAGTC1230.15204895234563323No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA1210.14957661165708633No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1130.13968724890289883No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1120.13845107855862537No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCAAGAATGAGGAGAGTACTACTTT1120.13845107855862537No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC1120.13845107855862537No Hit
CATAGAAGATGGTCTGCTACACTGGTCTGCCCACACTCATGCAAAGCTGG1120.13845107855862537No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1110.13721490821435195No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1110.13721490821435195No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1090.13474256752580507No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGGCTAGTCCGTCACCCCTAATC1070.13227022683725817No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC1060.13103405649298475No Hit
CATAGAAGATCCCATAGCAGCTTTGCCTATAGTTTTTCCAAATATAAGAT1050.1297978861487113No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA1030.12732554546016442No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC1010.12485320477161753No Hit
CATAGAAGGAGGGGAAACTGAGGCCACTGACGACATGGTTCTACACATAG1000.12361703442734409No Hit
CATAGACCCTTCTCCATGCCACATCATCCCATGGGTCCTTTTCACATCAT980.1211446937387972No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTACGTCAAGC930.11496384201743No Hit
CATAGACTCAAGCAATCCTCCCACCTACACTGACGACATGGTTCTACACA930.11496384201743No Hit
CATAGACCCTTCTCCATGCCACATCATCTATGAGACCAAGTCTCCATGGG880.1087829902960628No Hit
CATAGATCATGGGACTTCAGCATGGCAGTGTTTGCAGATTTGGACCTGCG880.1087829902960628No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCCGAGA870.10754681995178936No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT850.10507447926324247No Hit
CATAGATCATGCAAAGAACACAGGCCGGGCGCAGTGGCTCACACCTGTAA850.10507447926324247No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCTCTCCAGAACCCACCATCTATGA830.10260213857469559No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA810.1001297978861487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)