FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56156
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGCTTGGGTGCGAACATCAAGGAAGTTTCTGTGAGATCTATGAGA890015.848707172875562No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGTAATAACCAGGCCCCTCTATGAG581710.358643778046869No Hit
CATAGAGAAGACTCCCTCAACCCACCCACAGCCAGGAAAGAATCTATGAG48488.633093525179856No Hit
CATAGAAATGATGCTGAAGGGCCTGCCCTCTCTGCTGTTCCTTCTATGAG44347.895861528598903No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGTTCTGGGCCCCAGTGTGAA22914.079706531804259No Hit
CATAGACTCATTGCACTTTCCACAACTGTGTGCTTGAACCAGATTCTATG20903.721775055203362No Hit
CATAGATCATGGGACTTCAGCATGGCTCAGGTATGTCTTTATTAGCTCTA17893.185768217109481No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAAGGAAGTTTCTGTGAGATC13412.387990597620913No Hit
CATAGACTCATTGCACTTTCCACAACTGTCATTGTCGCTGTCCCATCTAT13162.3434717572476673No Hit
CATAGACGGATTATTCTCTCCATGGTCTACCAGTTATTAGTTGAATGAGC12582.2401880475817366No Hit
CATAGATCAAGGAAAACACCAGCCCACGCTGTCCTTCTCTGAATCTATGA11812.103070019232139No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGAAGTGATGGGCTAGATCTATGA10801.9232139041242255No Hit
CATAGAAGTCACGAGTTTTGTTGTTGTTCTTCCTTTTCTGCCTTCATCTA6341.1289977918655174No Hit
CATAGACGTGACTAAAAGCATGTTGGTGGAAGGGTAAGAGAGGGTCTATG6021.0720136761877628No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGCCCCAGTGTGAATACTTCT5741.0221525749697271No Hit
CATAGATCACGTAGAAACTGGAGAGGCTAATCTGAAATCTTCGTGTTCTA5610.9990027779756393No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAGGAACCATGGGAGGTCTAT4650.8280504309423748No Hit
CATAGAGTCCAACTATTCCAGCACCACGCTGTCCTTCTCTGAATCTATGA4560.8120236484080062No Hit
CATAGATGGCCAAGATACGAGCACATACACTGACGCTATACCACACTACA4550.8102428947930763No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGGGGTAAGGCGTACTGGTCTATGA4450.792435358643778No Hit
CATAGAAGCTGAGAAGACTTCCTAATGCAGAAGTAGGAAGTATTACCCCT3010.5360068380938814No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGCTATACCACACTA2830.5039532730251441No Hit
CATAGACTCATTGCACTTTCCACAACTGTCCCAACTGTCTCTGAAAAATT2770.4932687513355652No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTGCCTCTAAGTAAACTGAAT2580.4594344326518983No Hit
CATAGACCAGCAGACACTCCCATCATTTATTTTAAAGGACTGGAAGCCTC2550.45409217180710876No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGACATGGTTCTAC2500.44518840373245955No Hit
CATAGACCAGCAGACACTCCCATCATCAAGGAAGTTTCTGTGAGATCTAT2460.43806538927274025No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGCTATACCACACT2450.4362846356578104No Hit
CATAGAGAAGACTCCCTCAACCCACCACACTGACGCTATACCACACTACA2370.42203860673837174No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCTGTTTCCCCACTCAAATACCATC1910.34012394045159916No Hit
CATAGAAATGATGCTGAAGGGCCTGCACATAGAAATGATGCTGAAGTGAT1840.32765866514709024No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAGGAGCTGAGTCATGGGGTCTATG1740.3098511289977919No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGACATGGTTCTACA1630.29026283923356366No Hit
CATAGACCAGCAGACACTCCCATCATACACTGACGCTATACCACACTACA1630.29026283923356366No Hit
CATAGACACAACAGAGAGAACGGGCTACACTGACGACATGGTTCTACACA1580.28135907115891445No Hit
CATAGAGAAGACTCCCTCAACCCACGCTGTCCTTCTCTGAATCTATGAGA1550.27601681031412495No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAAAGAAATCTACAAAGGATTCTGG1470.26177078139468624No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGACATGGCTCAGGT1430.2546477669349669No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGATGCTGAAGTGATGGGCTAGAT1400.24930550609017738No Hit
CATAGAGAAGACTCCCTCAACCCACCCTGCAGTCTTTGGAGGAATCTATG1400.24930550609017738No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTGCTTCTTGTGGTAACTGGTC1360.242182491630458No Hit
CATAGACATTTAATCCTCACAATGACCCATTGCTTCTTGTGGTAACTGGT1260.22437495548115963No Hit
CATAGAAGGACAAAGACATTTAGGACCCACACTGACGACATGGCTCAGGT1150.20478666571693138No Hit
CATAGAAATGATGCTGAAGGGCCTGTTTCCCCACTCAAATACCATCTATG1140.20300591210200156No Hit
CATAGAAATGATGCTGAAGGGCCTGCAGAGTGTCTGTTTCCCCACTCAAA1130.20122515848707173No Hit
CATAGAAGCTGAGAAGACTTCCTAATGCACTACACATAGAGTGTCTGTTT1100.1958828976422822No Hit
CATAGACGTGACTAAAAGCATGTTGGTACACTGACGACATGGTTCTACAC1020.18163686872284351No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGCTGAAGTGATGGGCTAGATCTA1010.1798561151079137No Hit
CATAGAAATGATGCTGAAGGGCCTGCGATGCTGAAGTGATGGGCTAGATC1000.17807536149298384No Hit
CATAGAGATCCCACCATTTGCCATCTATGAGACCAAGTCTCTGCTACCGT950.16917159341833465No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC940.1673908398034048No Hit
CATAGACAGTGCCTTTGTGCGTGTTACACTGACGACATGGTTCTACAAAG920.16382933257354512No Hit
CATAGAAATGATGCTGAAGGGCCTGCACTGACGACATGGTTCTACACATA890.15848707172875562No Hit
CATAGATGTTTTATCAAAGGCATGCTCATACACTGGCTCAGGTATGTCTT880.15670631811382577No Hit
CATAGATCAAGGAAAACACCAGCCCACCCACAGCCAGGAAAGAATCTATG850.15136405726903626No Hit
CATAGAGTCTGAATGGTGGGAGAGTGATAGGCTTAGAGGGCTTGCTCTAT830.14780255003917658No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTTATTTTAAAGGACTGGAAGC820.14602179642424673No Hit
CATAGAAATGATGCTGAAGGGCCTGCTACCGTAGGTGGAAGGGTAAGAGA820.14602179642424673No Hit
CATAGACTCATTGCACTTTCCACAACTGTTCTTCCTTTTCTGCCTTCATC810.1442410428093169No Hit
CATAGAGCTTGGGTGCGAACATCAACCTTCTCCCAAGTATTAGAGCAAGT770.13711802834959755No Hit
CATAGAAATGATGCTGAAGTGATGGGCTAGATCTATGAGACCAAGTCTCT760.13533727473466772No Hit
CATAGAAATGATGCTGAAGGGCCTGCTACCGTAACGCTATACCACACTAC730.1299950138898782No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCAGTGTGGGCCCCAGTGTGAATAC730.1299950138898782No Hit
CATAGAAATGATGCTGAAGGGCCTGTGCTGAAGTGATGGGCTAGATCTAT720.12821426027494837No Hit
CATAGAAATGATGCTGAAGGGCCTGCAATGATGCTGAAGTGATGGGCTAG700.12465275304508869No Hit
CATAGACGGATTATTCTCTCCATGGTCTCAAACTGCTGGGGTTGCTCTAT690.12287199943015883No Hit
CATAGAGTGCCTGTTTCCTCATTCGTTCTACACATAGAGTGTCTGTTTCC680.121091245815229No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCAGTGTGCAGAAGTAGGAAGTATT600.1068452168957903No Hit
CATAGAAATGATGCTGAAGGGCCTGCCACTGACGACATGGTTCTACACAT570.10150295605100078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)