FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37470
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG537614.347477982385909No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA30748.203896450493728No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA29347.830264211369095No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT24936.653322658126501No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG19445.188150520416333No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA17924.782492660795303No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT12143.239925273552175No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT11543.0797971710701892No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA10522.807579396850814No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT8402.241793434747798No Hit
CATAGACTTCAGCCCTCACAAGCCTTGGAGGATGATCAATGCTGCTTCTA8032.143047771550574No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTGACTGTGTTAATTTAAAAGA6491.7320523085134776No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC6041.6119562316519884No Hit
CATAGACTGGTCTCGAACTCCCAACCACACTGACGACATGGTATATTTTC5821.55324259407526No Hit
CATAGAAAATAATGTGGCCGGGCATGGGCATTGCTCTTGACATCTCTATG5391.438484120629837No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTAGACTTGGTCTCTG5371.433146517213771No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCATGATTGTAAGTTTCT5141.37176407792901No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT4041.0781958900453696No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG3660.976781425140112No Hit
CATAGACACATGTAGGATGGGGTGGAGACAGCCGCTCACCTCTATGAGAC3420.9127301841473179No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG3220.8593541499866559No Hit
CATAGAGGTGTCCTTTCCCCACTTTATTTTAGGTCAAGGTGGGAGGATGG2660.7099012543368027No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG2210.5898051774753136No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGACAGCCGCTCACCTCTATGAG2010.5364291433146517No Hit
CATAGACTGGTCTCGAACTCCCAACCACACTGACGACATGGTTCTACACA1990.5310915398985855No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGATGTTCCATGTGTGTGCGATGTT1930.5150787296503869No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG1830.488390712570056No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG1660.44302108353349345No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT1630.4350146784093942No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAGACAGGATGCGCAGATGGTCT1620.4323458767013611No Hit
CATAGAACCAAAAATGGCTAGGCATGTTTATCACCTTCTATGAGACCAAG1610.42967707499332797No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA1540.4109954630370964No Hit
CATAGACACATGTAGGATGGGGTGGCTGCCATGATTGTAAGTTTCTTGAG1530.4083266613290632No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG1400.373632239124633No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGACAGGATGCGCAGATGGTCTA1180.31491860154790496No Hit
CATAGAAAATAATGTGGCCGGGCATGGAGACAGCCGCTCACCTCTATGAG1180.31491860154790496No Hit
CATAGAACTCCATCATAAGTCAAAGAGCATTACCCTCAAACTATCCTCTT1160.3095809981318388No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT1030.2748865759274086No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTTCCATG780.2081665332265813No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGGCATTGCTCTTGACATCTCTATG750.20016012810248196No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTCCCTCTATGAGACCAAGTCTC700.1868161195623165No Hit
CATAGACTGGTCTCGAACTCCCAACCAGTAGCAAGATAGGACAGAATTCT690.18414731785428343No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTTCCATGTGTGTGCG670.17880971443821725No Hit
CATAGACTGGTCTCGAACTCCCAACCACCTATCTACCCCCGGTCTATGAG650.17347211102215104No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC650.17347211102215104No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACAGTTCATTGTATTCTCTATGAG610.1627969041900187No Hit
CATAGAGGGTTGGAGATGGGGAAAGGTGGAGGATGATCAATGCTGCTTCT590.15745930077395248No Hit
CATAGATCATGGGACTTCAGCATGGCACACTGACGACATGGTTCTACACA570.1521216973578863No Hit
CATAGAGCAGACAAACTTGCAAAAGACTTGAGATGGTATATTTTCTAAAG500.13344008540165467No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTACACTGACGACATGGTTCTACAC490.13077128369362157No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCTGTGCTGGGTAGTGGTAGTCTAT470.12543368027755536No Hit
CATAGAGCATTACCCTCAAACTATCCCTACCTCAAATGCCAGCAAGGGAA460.12276487856952228No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGAGTTGCAATATAGATGAAATGCC460.12276487856952228No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTTATGTA430.11475847344542299No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCCATGTGT420.11208967173738991No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTTATGTAGACAGGGATTGATCTC420.11208967173738991No Hit
CATAGAGCAGACAAACTTGCAAAAGACTACACTGACGACATGGTTCTACA410.10942087002935681No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGACTGTGTTAATTTAAAAGAACA410.10942087002935681No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATAGGTCAAGGTGGGAGGATG400.10675206832132372No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGAGGGAACAAAACTCTATGAGACC390.10408326661329065No Hit
CATAGAGGTGTCCTTTCCCCACTTTACCTCAAATGCCAGGCTCTATGAGA380.10141446490525755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)