FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88216
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1679719.040763580302894No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA76018.616350775369549No Hit
CATAGACCCTGGATTAGCATGAGGAACATGGCTTCCCATTTCAGACAAGG61156.931849097669357No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT33013.741951573410719No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT32533.6875396753423417No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG27083.0697379160243043No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA18702.1197968622472114No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT17221.952026843203047No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA17151.944091774734742No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA14001.587013693661014No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG9971.1301804661285935No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT9611.0893715425773103No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGGTTAAACAATATCCAAATCC9461.0723678244309423No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG8200.9295365920014511No Hit
CATAGACATGCTAACATTTCTGGGGATAGCAGAGACTTGGTCTCATAGAC7990.9057313865965357No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACCCAAATGGACATTTCACTTATA7790.8830597624013784No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC6740.7640337353768024No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC6430.7288927178743085No Hit
CATAGATGGAGAGAGTGAGGGAAAGGAAATTATGGGAGCCCTGTGAAACG6420.7277591366645506No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT5860.6642785889181101No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG5450.6178017593180376No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT5410.613267434479006No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACATAGAGCAGGAATTAGACTC5130.5815271606057858No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC4750.5384510746349869No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG4350.49310782624467214No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG4000.45343248390314683No Hit
CATAGATGAAAAGTCAAGCCAGCACAAATATTTGGAAACTAATTCCACTG3860.4375623469665367No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT3840.43529518454702093No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA3820.4330280221275052No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT3400.38541761131767477No Hit
CATAGATGCATCAGCAACTCACAGATTATGACATAAAATATGTGATAAAT3390.3842840301079169No Hit
CATAGACCTCCTGTTTGACCATTTTGACTGTTATTACAAAATAATGTTAA3300.3740817992200961No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATCATCACTTATACGCCTCCCTGT3190.36161240591275956No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT3170.35934524349324387No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG3050.34574226897614946No Hit
CATAGACATGCTAACATTTCTGGGGATACTAACATTACTGGGGACTGTGA3040.3446086877663916No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCAGTGTTGGAAGTACACAA3030.3434751065566337No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG2990.3389407817176023No Hit
CATAGAAGCAGGATGAAAACATGGTACAGTGTGGAAGTACACAAAAAGGG2960.33554003808832866No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT2920.3310057132492972No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGAGCAGGAATTAGACTCTTGA2620.29699827695656117No Hit
CATAGACATGCTAACATTTCTGGGGATACGGTAGCAGAGACTTAGTCTCA2550.28906320848825606No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2470.27999455881019314No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGCCATGCTGAAGTCCCATGAT2410.27319307155164596No Hit
CATAGACATGCTAACATTTCTGGGGATAGGATTTGGAAGTTAGGAAGCCA2340.2652580030833409No Hit
CATAGACTGTCATTGCTTGCCCATTGGGATTTAAAAAAAGGAAAAGAACA2330.26412442187358304No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA2130.24145279767842567No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC2110.23918563525890993No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTGGAAGTACACAAAAAGGG1990.22558266074181554No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC1970.2233154983222998No Hit
CATAGACCCACTTTCGTGACTTTGTGTATGCAAGACTAGGCAATTTACAA1880.213113267434479No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAG1800.20404461775641608No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTCCAG1680.19044164323932167No Hit
CATAGACTGTCATTGCTTGCCCATTGGAAGTTAGGAAGCCAGCTCTATGT1630.18477373719053233No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA1580.179105831141743No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT1530.17343792509295367No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1450.16436927541489071No Hit
CATAGATGCATCAGCAACTCACAGATTCTTGGTCTCATAGAGCAGGAATT1410.15983495057585925No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA1360.15416704452706992No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA1260.14283123242949125No Hit
CATAGACTGTCATTGCTTGCCCATTGTACGGGAGCAGGAATTAGACTCTT1190.13489616396118617No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCATGATTGT1180.1337625827514283No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG1180.1337625827514283No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC1130.12809467670263897No Hit
CATAGAGCAGAAAACCTTTGAATAACAGATAGAGCAGGAATTAGACTCTT1130.12809467670263897No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGTTGGAAGTTAGGAAGCCAGCT1110.12582751428312325No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA1080.12242677065384963No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA1080.12242677065384963No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAGAAGTCAAATTGTCC1070.12129318944409179No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC1070.12129318944409179No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA1060.1201596082343339No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCGTGCCAC1020.11562528339530244No Hit
CATAGATGAAAAGTCAAGCCAGCACAGTGAAACCCTGTCTCTACGAAAAA1020.11562528339530244No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1010.11449170218554457No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTAGAT990.11222453976602884No Hit
CATAGACCTCCTGTTTGACCATTTTGATACGGAGCAGGAATTAGACTCTT950.10769021492699737No Hit
CATAGAATCCTTTCCCCATTGCTTGTGTCTCATAAATTCAACAGGCTTTC930.10542305250748163No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG900.10202230887820804No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC900.10202230887820804No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACTCCACAT890.10088872766845017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)