FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96373
Sequences flagged as poor quality0
Sequence length150
%GC44

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3155632.74361076235045No Hit
CATAGATTGCACATAAAGTCTGATCCCATCTCAAGTCTCACTCTTCTATG45524.723314621315098No Hit
CATAGAGAATACAATGAACTGTGATGGCACTCCTATGTAATGTCTTATTT37783.9201851140879707No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGTGATTACAGGTG35963.731335540037147No Hit
CATAGACTACCACTACCCAGCACAGGAGCACCCTCTATGTGTAGAACCAT28662.9738619737893393No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGAGGCACTTGGTCCAGA27622.865947931474583No Hit
CATAGAGCCTGGCATTTGAGGTAAGGCTTGTGAGGGCTGAAGTCTATGTG27392.8420823259626657No Hit
CATAGAGAATACAATGAACTGTGATGGCAGTGTAGGGATAGTTTGAGGGT19822.0565926141139115No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTACTCCTAT17641.8303881792618264No Hit
CATAGAAGCAGCATTGATCATCCTCCACCCCATCCTACATGTGTCTATGT16281.6892698162348376No Hit
CATAGAGATGTCAAGAGCAATGCCCAGCCACCCCATCCTACATGTGTCTA13681.419484710447947No Hit
CATAGACTACCACTACCCAGTACAGGAGCACCCTCTATGTGTAGAACCAT13171.3665653243128262No Hit
CATAGAGATGTCAAGAGCAATGCCCGGCCACATTATTTTCTATGTGTAGA8920.925570439853486No Hit
CATAGACTACCACCACCCAGTACAGGAGCACCCTCTATGTGTAGAACCAT8880.9214198997644569No Hit
CATAGAACATCGCACACACATGGAACTCCTATGTAATGTCTTATTTTGTT7290.7564359312255508No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGTG6950.7211563404688035No Hit
CATAGACTCAAGAAACTTACAATCATGGCATTGCTCTTTGACTTATGATG5930.6153175681985619No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAGAGTGCTGGAATTATAGGCG5840.6059788529982464No Hit
CATAGAAGGTGATAATCATGACAGCCAAGCTATATAGAAGTACATGGTGG5110.5302314963734656No Hit
CATAGAGATGTCAAGAGCAATGCCCAGCCACATTATTTTCTATGTGTAGA4520.46901103006028666No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTATTACTACAGGTG4130.428543264192253No Hit
CATAGAAGCAGCATTGATCATCCTCCACCCAGTACAGGAGCACCCTCTAT4000.4150540089029085No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGAAGGTGTAAGGGAAGCCAC3870.40156475361356403No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGAAAGTGAAGGAGAGGCCAC3860.40052711859130663No Hit
CATAGAGATGTCAAGAGCAATGCCCACCCCATCCTACATGTGTCTATGTG3760.39015076836873397No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTTAGGGATA3480.3610969877455304No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGCG3440.3569464476565013No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGAG3440.3569464476565013No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGCA3360.34864536747844316No Hit
CATAGAAGCAGCATTGATCATCCTCCAGCAGCATTTTAACACAGCATTGA2940.3050646965436377No Hit
CATAGACCATCCTCCCACCTTGACCTCTCAAAGTGCTAGGGTTACAGGCA2840.29468834632106505No Hit
CATAGAGAATACAATGAACTGTGATGGCACCAAGCCCACTCCCTGTGAGA2730.28327436107623505No Hit
CATAGAGCCTGGCATTTGAGGTAAGGTACGGTAGCAGAGGCACTTGGTCC2450.2542205804530314No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAACAGGTACTGGGATTACAGG2430.2521453104085169No Hit
CATAGATGACATAGACCTTATACCCTCATCAGTGTGCCACCCCATCCTAC2410.2500700403640024No Hit
CATAGAAGCAGCATTGATCATCCTCCAAGGCTTGTGAGGGCTGAAGTCTA2320.24073132516368692No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTAGTGTAGTCTTTTG2250.23346788000788601No Hit
CATAGAGATCAATCCCTGTCTACATAACCATGTCGTCAGTGTACTCCTAT2140.22205389476305606No Hit
CATAGATCCCAGGCTTTAGAAAATATACCACCACCCAGTACAGGAGCACC2090.21686571965176968No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATACGGTAGAGGCACTTGGTC2090.21686571965176968No Hit
CATAGACCATCTGCGCATCCTGTCTGCTCTTTGACTTATGATGGAGTTCT2080.21582808462951242No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCCTAGCCATTTTTGGTTCTATG2000.20752700445145425No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGAGATTACACACG1970.2044140993846824No Hit
CATAGACCATCCTCCCACCTTGACCTTCCAAAGTGCTAGGATAATAGGTG1930.20026355929565332No Hit
CATAGAAGCAGCATTGATCATCCTCCATACGGTAGCATTTTAACACAGCA1920.19922592427339605No Hit
CATAGAAGGTGATAATCATGACAGCCACCCCATCCTACATGTGTCTATGT1890.19611301920662425No Hit
CATAGACCATCTGCGCATCCTGTCTGTTTGGCTTCCCTGCTTGTCTTTCA1850.19196247911759518No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTAGGATTACAAGTG1820.18884957405082337No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTAGGGATAG1760.18262376391727975No Hit
CATAGACTACCACTACCCAGCACAGCATTTTAACACAGCATTGAAGTTCT1760.18262376391727975No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGTATTACAGGTG1740.1805484938727652No Hit
CATAGACCATCCTCCCACCTTGACCTCCATCTTGACCTCCCAAAGTGCTG1580.16394633351664886No Hit
CATAGAAGCAGCATTGATCATCCTCCACATAGAAGCAGCATTTTAACACA1480.15356998329407615No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGAGATTACAGAAG1470.15253234827181886No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGTTAGGATTACAGGCA1430.1483818081827898No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA1410.14630653813827524No Hit
CATAGACCATCTGCGCATCCTGTCTGGCTTCCCTGCTTGTCTTTCATCTA1400.14526890311601798No Hit
CATAGAAGGTGATAATCATGACAGCCAATATTTACTGAATAGTTTCTATT1390.1442312680937607No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1330.13800545796021707No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1300.13489255289344526No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1240.12866674275990164No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGAGATTACAGGCA1210.12555383769312983No Hit
CATAGACCATCCTCCCACCTTGACCTCCCCAGTGCTGGAATTACAGGAGT1190.12347856764861528No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1180.12244093262635801No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCTGAAGTCCCATGATCTATGTG1170.12140329760410075No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGGGCTGGGATGACACGCA1120.11621512249281438No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1120.11621512249281438No Hit
CATAGAGTTTTGTTCCCTTGCTGGCATTGCTTGGTCTATGGCTGGCTTGC1110.11517748747055712No Hit
CATAGAAGGTGATAATCATGACAGCCAAGGCTTGTGAGGGCTGAAGTCTA1100.11413985244829983No Hit
CATAGAAGCAGCATTGATCATCCTCCATGTGTCTATGTGTAGAACCATGT1100.11413985244829983No Hit
CATAGAGAATACAATGAACTGTGATGGCATACGGTAGCATTTTAACACAG1100.11413985244829983No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAGTGTTGGGATTATAGGCGT1060.10998931235927074No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1020.10583877227024166No Hit
CATAGACCATCTGCGCATCCTGTCTGGTCCTTTCCCCATCTCCAACCCTC1000.10376350222572713No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA990.10272586720346986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)