FastQCFastQC Report
Tue 7 May 2024
EGAF00005804318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26966
Total Bases4 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT17586.519320625973448No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA16446.096566046132167No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA16276.0335236965067125No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA14515.380849959207891No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT12904.783801824519766No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG11174.142253207743083No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC11074.105169472669287No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG7662.840614106652822No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT5812.1545650077875846No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT5782.1434398872654454No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA4631.7169769339167842No Hit
CATAGACCTTTGGGTTCATATCATCTGGACACTGACTGATACAGGAAGGC4391.627975969739672No Hit
CATAGATGCCCTTTTTGTGTACTTCCACTGACGACATGGTTCTACACATA4271.5834754876511161No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG3031.1236371727360381No Hit
CATAGATGTCCATCATGTGGAAGCTGCACTGACGACATGGTTCTACACAT3011.1162204257212787No Hit
CATAGAGAGATTTTGGGCTGAGACGACACTGACTGATACAGGAAGGCCTT3001.1125120522138991No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTATCCCCAGAAATGTTAG2791.034636208558926No Hit
CATAGATGTATACAAGCTGTCACAGACAACAAGCAATGGGGAAAGGATTC2640.9790106059482311No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG2490.9233850033375361No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC2440.9048431358006379No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACACCTGATTGGCCATTTGAA2300.8529259066973225No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGTGCTTCTTTCAAAAGTCTGGT2240.8306756656530446No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA2120.7861751835644887No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACCTGATTGGCCATTTGAAC1920.7120077134168954No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA1910.7082993399095158No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCACCT1580.5859230141659868No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA1520.5636727731217088No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGCC1510.5599643996143292No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTATACGTGAATGTGGATCAGAA1390.5154639175257731No Hit
CATAGATCCCATCCAATAATAATGAGCAGGAATTAGACACAAGCAATGGG1380.5117555440183935No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC1300.4820885559593562No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGTATCCCCAGAAATG1280.47467180894459693No Hit
CATAGACAGAAACCACCCAGACAACCTGATTGGCCATTTGAACTCTATGA1190.44129644737817997No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG1180.43758807387080023No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTACCATGTTTTCATCCTG1170.4338797003634206No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTATCCCCAGAAATGTTAGCATGT1070.39679596528962396No Hit
CNTAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT930.3448787361863087No Hit
CATAGAGCTGGCTTCCTAACTTCCAACAATGGGCAAGCAATGACAGTCTA910.33746198917154935No Hit
CNTAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA910.33746198917154935No Hit
CATAGATCATGGGACTTCAGCATGGCTACACATGGCTATGCAATCTATGA880.32633686864941036No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCCATAACAAGCAATGGGGAAA860.31892012163465105No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTATGAGACC850.3152117481272714No Hit
CATAGATCCCATCCAATAATAATGAGCACACTGACGACATGGTTCTACAC800.2966698805903731No Hit
CATAGATGTCCATCATGTGGAAGCTGCCTTCCTAACCATGGGCATATCTA800.2966698805903731No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAC790.2929615070829934No Hit
CNTAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA750.2781280130534748No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCGTATTCCTCATGCTAATCCA750.2781280130534748No Hit
CATAGATGCCCTTTTTGTGTACTTCCACATGGTTCTACACATAGATGCCC660.24475265148705777No Hit
CNTAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA610.22621078395015948No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT580.2150856634280205No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTCACAATCCCCAGAAATGTTAGC530.19654379589112217No Hit
CNTAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC480.17800192835422385No Hit
CNTAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT450.16687680783208483No Hit
CNTAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT440.16316843432470518No Hit
CATAGATGCCCTTTTTGTGTGCTTCTTTCAAAAGTCTGGTCTATGAGACC430.15946006081732553No Hit
CNTAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG430.15946006081732553No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTGTTATTCAAAGGTTTTCTGC410.1520433138025662No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTACAATGGG410.1520433138025662No Hit
CATAGAGAGATTTTGGGCTGAGACGACATGCTTCCTTCTGCTGGCTATTC390.1446265667878069No Hit
CNTAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG390.1446265667878069No Hit
CATAGAGCTGGCTTCCTAACTTCCAATAACAATGGGCAAGCAATGACAGT380.1409181932804272No Hit
CATAGAGGATCCCATCTGAGTTGGTCACACTGACGACATGGTTCTACACA370.13720981977304755No Hit
CATAGATCCTCTCATTGTCCAGTTTGGCTACACATGGCTATGCAATCTAT340.12608469925090854No Hit
CATAGATCCTCTCATTGTCCAGTTTGGTACACTGACGACATGGTTCTACA340.12608469925090854No Hit
CATAGATCATGGGACTTCAGCATGGCACACTGACGACATGGTTCTACACA340.12608469925090854No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGAGACAAGCAATGGGGAA310.11495957872876955No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCACAGATCATTTAAGCTCAATCT300.1112512052213899No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG280.10383445820663058No Hit
CATAGAGATGTTTGATAAGCAGGGTGAATGTGGATCAGAACTTCTATGAG280.10383445820663058No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCAATGGGCAA270.1001260846992509No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)