FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45872
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG2091045.58336239972096No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG10982.393617021276596No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA10652.3216777118939658No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA9672.108039762818277No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA8111.7679630275549356No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG7891.7200034879665156No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGACATGGTTCTACACA6631.4453261248692013No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA6501.4169863969305896No Hit
CATAGATCATGGGACTTCAGCATGGCACACTGACGACATGGTTCTACACA6391.3930066271363795No Hit
CATAGATGTGCCTCTCCAACATTCATACACTGACGACATGGTTCTACACA6301.3733868154865714No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC6091.3276072549703521No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC5371.170648761771887No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG4480.9766306243460063No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC3800.8283920474363446No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCACACTGACGACATGGTTCT3370.7346529473317056No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG3220.701953261248692No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG3050.6648936170212766No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGAACCTCTCCAGCCTAAAGACACA2450.5340948726892222No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC1600.3487966515521451No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1400.30519707010812697No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT1370.2986571328915243No Hit
CATAGACCATTTGCCGCGTTCTGAAGTCCTGGCATATACAAGGTGTCTAT1280.2790373212417161No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTATCATTTCC1250.27249738402511336No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA1220.26595744680851063No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC1080.23543773979769794No Hit
CATAGACTCAAGCAATCCTCCCACCTTGACCTCTCAAAGTGCTAGGATTA1050.2288978025810952No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGGATTAT980.21363794907568887No Hit
CATAGAAGATGGTCTGCTACACTGGTTACGGAGCATGTTGAGATGAATAA960.20927799093128704No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA950.20709801185908616No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG950.20709801185908616No Hit
CATAGAAGGAGGGGAAACTGAGGCCATAGAAGGAGGGAAGGAAGGGCAAA950.20709801185908616No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA910.19837809557028252No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT890.1940181374258807No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA880.19183815835367982No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA870.18965817928147888No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG870.18965817928147888No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA860.187478200209278No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG860.187478200209278No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAGTTTTTCCAAATATAAGAT860.187478200209278No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT860.187478200209278No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT820.17875828392047438No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG820.17875828392047438No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT800.17439832577607256No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTCTATGGGCTAGTCCGTCACCC800.17439832577607256No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT770.16785838855946983No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG760.16567840948726892No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGGAAAGCAATCACCGCCAG720.1569584931984653No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT710.1547785141262644No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG700.15259853505406348No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC700.15259853505406348No Hit
CATAGACCCTTCTCCATGCCACATCAGTGTAGCATGTTGAGATGAATAAT700.15259853505406348No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTA670.14605859783746075No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC660.14387861876525987No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGTACGGGGGCAGATTAACAG660.14387861876525987No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG660.14387861876525987No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGAGGAAAGCAATCACCGCCAGTC650.14169863969305893No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGGAAAGCAATCACCGCCAGT640.13951866062085805No Hit
CATAGATCACCTACACAGACAGCTTTCCGTCTCAAGAATGAGGAGAGTAC620.13515870247645623No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGCTACCTCCGGGTCCAGTTGCCTC610.13297872340425532No Hit
CATAGAGGGGCATGCTGGATAAATCTACACATAGAGCCATGGGTCCTTTT610.13297872340425532No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCA590.12861876525985352No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG580.12643878618765259No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCGGAGGGAAGGAAGGGCAA580.12643878618765259No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG580.12643878618765259No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG570.12425880711545169No Hit
CATAGATCATGGGACTTCAGCATGGCCACATCTATGAGGAAAGCAATCAC560.12207882804325079No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCATGCCTGTAATCCTAGCACTTTG550.11989884897104987No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG550.11989884897104987No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA550.11989884897104987No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG540.11771886989884897No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT530.11553889082664807No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG530.11553889082664807No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAATTAGCGA530.11553889082664807No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA530.11553889082664807No Hit
CATAGATCATGGGACTTCAGCATGGCAGTGTTTGCAGATTTGGACCTGCG520.11335891175444715No Hit
CATAGATCTAGTACTGTAATTGTAGTGTGCAGGGATTATCAGTAGTGCTC490.10681897453784443No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTATAGCCAGTGTCTCCC490.10681897453784443No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA490.10681897453784443No Hit
CATAGAGGTCGCAGCTACCCAGAAAGATCTCAGGAATTGGGCTGGACGCA480.10463899546564352No Hit
TAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCGAG470.10245901639344263No Hit
CATAGATGTGCCTCTCCAACATTCACCAAGTCACCCAGCCTCTATGAGAC460.1002790373212417No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAACTGGGACTA460.1002790373212417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)