FastQCFastQC Report
Wed 8 May 2024
EGAF00005804408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123126
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG4181733.9627698455241No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG49203.9959066322303984No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG33222.698049152900281No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA28692.33013335932297No Hit
CNTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG27902.2659714438867504No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA27662.2464792164124554No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG22031.7892240469112939No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA21821.7721683478712862No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC17971.45948053213781No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT17031.3831359745301561No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG15701.2751165472767734No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC13571.1021230284424086No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC9050.7350194110098598No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA8480.6887253707584101No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA6730.5465945454250117No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGGAGGGAAGGAAGGGCAAACTC6610.5368484316878644No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG6170.5011126813183243No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC5710.4637525786592597No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA5230.42476812371067035No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC4780.3882201971963679No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT4760.3865958449068434No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT4670.37928625960398293No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAACCACTTGAACATTGCCTT4660.3784740834592207No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG4570.37116449815636016No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA3610.2931955882591816No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC3530.2866981791010834No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG3300.2680181277715511No Hit
CATAGAGGGGCATGCTGGATAAATCTGGTAGCATGTTGAGATGAATAATT3240.26314507090297745No Hit
CATAGACCCTTCTCCATGCCACATCAGTGTAGCATGTTGAGATGAATAAT3240.26314507090297745No Hit
CATAGAACTTTGTGCCCCCAGTGTCTACCGTACCACACTCATGCAAAGCT3120.25339895716583016No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGATACACTGGTACACTGAC3000.24365284342868282No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA2700.21928755908581454No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2690.21847538294105226No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT2660.21603885450676544No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTTAGGTAGAGGAGTTTCAAA2600.2111657976381918No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA2530.20548056462485584No Hit
CATAGAGGGGCATGCTGGATAAATCTCATTTCCCCTCTCTCTGAATAACT2510.2038562123353313No Hit
CATAGATGTGCCTCTCCAACATTCATGCAAAGGAGGGAAGGAAGGGCAAA2490.20223186004580673No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT2480.20141968390104448No Hit
CNTAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG2470.2006075077562822No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA2390.19411009859818396No Hit
CATAGAGCTTCTGATCACTTTCGCCCACACTCATGCAAAGCTGGTCTATG2390.19411009859818396No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCATTTCCCCTCTCTCTGAATAACT2380.1932979224534217No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2190.17786657570293846No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG2110.17136916654484025No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA2060.16730828582102886No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2010.1632474050972175No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG1970.1599987005181684No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1950.15837434822864382No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG1900.15431346750483246No Hit
CNTAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG1880.1526891152153079No Hit
CATAGAGGGGCATGCTGGATAAATCTTAACTTCAGGGTGCTCCTCTATGA1760.14294300147816058No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA1750.14213082533339833No Hit
CNTAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA1740.14131864918863604No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGCCCTGCG1740.14131864918863604No Hit
CATAGACACCTGGATCCTGTGTTGTCTCATTTCCCCTCTCTCTGAATAAC1740.14131864918863604No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGAGCAGAGTTGGGTGTGTC1700.1380699446095869No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT1690.13725776846482465No Hit
CATAGACACCTGGATCCTGTGTTGTCTGCATGATATTCACCAAGTCACCC1680.13644559232006237No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1670.13563341617530011No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAATGGCATTAAATGACTTGCCCAA1610.13076035930672644No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT1600.1299481831619642No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCCGATTTGGACCTGCG1570.12751165472767734No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1570.12751165472767734No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1550.12588730243815277No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGAAAGCAATCACCGCCAGTCTAT1550.12588730243815277No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1540.12507512629339052No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1530.12426295014862823No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1460.1185777171352923No Hit
CATAGAGCTTCTGATCACTTTCGCCCGTAAGCATGTTGAGATGAATAATT1450.11776554099053003No Hit
CATAGACACCTGGATCCTGTGTTGTCTACACTGAGCAGAGTTGGGTGTGT1440.11695336484576775No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT1440.11695336484576775No Hit
CATAGACCCTTCTCCATGCCACATCATCTATGAGGCTCTCTCCAGAACCC1420.1153290125562432No Hit
CNTAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA1420.1153290125562432No Hit
CNTAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG1400.11370466026671865No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTA1390.11289248412195638No Hit
CNTAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA1370.11126813183243182No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAACTTCTTA1350.10964377954290727No Hit
CATAGAAGATCCCATAGCAGCTTTGCCTAGGATGGCCAGTACATTGTTGA1310.10639507496385817No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA1280.10395854652957134No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)