FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116630
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3958633.94152447912201No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC76636.570350681642802No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT30712.6331132641687387No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA30012.573094401097488No Hit
CNTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG25242.1641087198833917No Hit
CATAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT22091.8940238360627626No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA21191.8168567263997255No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT17921.5364828946240245No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA17111.4670324959272916No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA13701.1746548915373403No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA12391.062333876361142No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGTGGTGTGGTG10420.8934236474320502No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT8540.7322301294692617No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG6790.5821829717911344No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA6730.5770384978135985No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTGGTGCACATGCC6630.5684643745177056No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC5920.5075880991168653No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGT5830.4998713881505616No Hit
CATAGAGCTGGCTTCCTAACTTCCAATCTGTGAGTTGCTGATGCATCTAT5420.46471748263740037No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGAGTT5270.45185629769356084No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT5270.45185629769356084No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAACCTGTCTCTACT4780.40984309354368514No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTGCTTCTTTCAAAAGTCTGGT4660.3995541455886135No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTAATCCCAGCTACTCAGG4580.39269484695189916No Hit
CATAGAGATGTTTGATAAGCAGGGTGATCTATCCAGGAATTTTATTTTAA4510.3866929606447741No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG4380.37554660036011317No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACTGATACAGGAAGGCCTTT3920.33610563319900544No Hit
CATAGACACCATGCCTGGCTAATTTTAAAATTAGTACCTATAATCTCAGC3910.3352482208694161No Hit
CNTAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC3860.3309611592214696No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTCAATGGGCAAGCAATGACAG3490.29923690302666556No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTACCATTTTCCCCCAAGTCATCT3360.28809054274200463No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT3180.27265712080939725No Hit
CATAGACAGAAACCACCCAGACAACCACACTGACTGATACAGGAAGGCCT2990.25636628654720056No Hit
CATAGACACCATGCCTGGCTAATTTTTAAATATTTTGTAGAGACCGGGTT2920.25036440024007545No Hit
CATAGACACCATGCCTGGCTAATTTTTTTGTGTTTTTGGTAGAGATGGGG2640.22635685501157507No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA2500.2143530823973249No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC2340.2006344851238961No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGTGCTTCTTTCAAAAGTCTGGT2300.19720483580553888No Hit
CATAGATGTATACAAGCTGTCACAGACAACACACTGACTGATACAGGAAG2300.19720483580553888No Hit
CATAGATGAAAGCCTGTTGAATTTATGACTGATACAGGAAGGCCTTTCTA2250.1929177741575924No Hit
CATAGATTGGAACTTTGCCAGCCTTACACTGACTGATACAGGAAGGCCTT2220.1903455371688245No Hit
CATAGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTT2200.1886307125096459No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTATCCCCAGAAATGTTAGCATGT2120.1817714138729315No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2050.17576952756580638No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTCTCTAAATATACACTCA2040.1749121152362171No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTT2040.1749121152362171No Hit
CATAGACCTTTGGGTTCATATCATCTGGACACTGACTGATACAGGAAGGC1960.16805281659950272No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG1920.16462316728114548No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCATACACTGACGACCTGATTGGC1770.151761982337306No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGCGTATTCTAAATATACAATCA1760.1509045700077167No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG1690.14490268370059162No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA1640.14061562205264513No Hit
CNTAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT1620.13890079739346653No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG1620.13890079739346653No Hit
CNTAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA1620.13890079739346653No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1580.13547114807510932No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1570.13461373574552002No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCCGATTTGGACCTGCG1540.1320414987567521No Hit
CATAGATGTATACAAGCTGTCACAGACAACAAGCAATGGGGAAAGGATTC1490.1277544371088056No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1480.12689702477921633No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1480.12689702477921633No Hit
CATAGATTCTGAAGAAATCAGATAGAGAGAAACACACTGACTGATACAGG1460.12518220012003772No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT1430.12260996313126983No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1430.12260996313126983No Hit
CNTAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT1410.12089513847209123No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTATCCCCAGA1360.11660807682414473No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1340.11489325216496613No Hit
CATAGATGCCCTTTTTGTGTACTTCCATACGGTACCATTTTCCCCCAAGT1320.11317842750578753No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCCGTCTCTA1300.11146360284660893No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1280.10974877818743034No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1270.10889136585784102No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA1260.10803395352825174No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG1260.10803395352825174No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1240.10631912886907313No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACTTGCG1240.10631912886907313No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGCCCTGCG1230.10546171653948383No Hit
CATAGACCTGGGCTTAGGGGCTATACCGTAATACGTGAATGTGGATCAGA1170.10031724256194804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)