FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18634
Sequences flagged as poor quality0
Sequence length150
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGCGTT10755.769024364065686No Hit
CATAGAGAGATTTTGGGCTGAGACGATGAGGTTTTCTAAATATACAATCA10325.538263389503059No Hit
CATAGAGCAACAGGGACTCTCATTCACTGCTGGTGGGAATGCAAACTGGA9375.028442631748417No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA8764.701084039927015No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA7594.073199527744982No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT6653.5687453042824946No Hit
CATAGAACCTCTTTTGGGGCAAAGTTATATACCCACATGTATTAGTTTGC6103.273585918214018No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT6063.2521197810454012No Hit
CATAGACAGGGAGGCGTATAAGTGATGAAATCTCTACTAAAAATACAAAA5202.7905978319201457No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA5162.7691316947515294No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA4782.5652033916496726No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG4122.2110121283675004No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT3832.0553826338950305No Hit
CATAGACACCATGCCTGGCTAATTTTTAAATATTTTGTAGAGACCGGGTT3752.0124503595577976No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC3611.9373188794676397No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC3511.8836535365460987No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA2991.604593753354084No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA2781.4918965332188472No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGAATGGTTCTACACAT2721.4596973274659226No Hit
CATAGATGCCCTTTTTGTGTACTTCCAACATGGTTCTACACATAGATGCC2451.314800901577761No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTGGTGCACATGCC2111.1323387356445207No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG2031.0894064613072878No Hit
CATAGACCTTTGGGTTCATATCATCTGGCCAACATGGTGAAACCCTGTCT1730.928410432542664No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTAAAACATCATCTCTA1530.8210797466995814No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTCAATTCCCAGACATAAGCCAGT1510.8103466781152732No Hit
CATAGATGCCCTTTTTGTGTACTTCCATAGAAATCTGACATTTCTCATAA1450.7781474723623484No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGT1200.6439841150584953No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT1050.5634861006761833No Hit
CATAGAGAGATTTTGGGCTGAGACGATGCATGGTACTGGTACCAAAACAG930.4990876891703338No Hit
CATAGATGCCCTTTTTGTGTACTTCCACATGGTTCTACACATAGATGCCC880.47225501770956313No Hit
CATAGAGCTGGCTTCCTAACTTCCAACACTGACGACATGGTTCTACACAT870.4668884834174091No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA860.4615219491252549No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGTGCTTCTTTCAAAAGTCTGG820.44005581195663845No Hit
CATAGATGTCCATCATGTGGAAGCTGTGCTTCTTTCAAAAGTCTGGTCTA810.4346892776644843No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTATCCCCAGAAATGTTAGCATGT810.4346892776644843No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG780.41858967478802195No Hit
CATAGATTGGAACTTTGCCAGCCTTATCCCCAGAAATGTTAGCATGTCTA770.4132231404958678No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTAATCCCAGCTACTCAGG730.3917570033272513No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTCTCTAAATATACACTCA680.36492433186648066No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACACTGACTGATACAGGAAG670.3595577975743265No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCATATGTCTTTATCAGCAGCATT560.30052592036063114No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCACAGATCATTTAAGCTCAATCT560.30052592036063114No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTATCCCCAGA540.28979285177632286No Hit
CATAGAGAGATTTTGGGCTGAGACGAAGTCTCTGCTACCGTACCTTCCTA500.2683267146077063No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC490.26296018031555224No Hit
CATAGATGCCCTTTTTGTGTACTTCCACATAGATGCCCTTTTTGTGTGCT480.25759364602339807No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGGGAAACCCCATCTCTA460.24686057743908982No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT440.23612750885478156No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAATC410.22002790597831923No Hit
CATAGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTT410.22002790597831923No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG410.22002790597831923No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT400.21466137168616506No Hit
CATAGATCATGGGACTTCAGCATGGCTACACATGGCTATGCAATCTATGA400.21466137168616506No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGTGGTCTCATAGAATCCTTTC390.20929483739401097No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG350.18782870022539444No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTACCATGTTTTCATCCTG340.18246216593324033No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCACCTGATTGGC340.18246216593324033No Hit
CATAGAGCAACAGGGACTCTCATTCAATAACAATGGGCAAGCAATGACAG310.16636256305677793No Hit
CATAGATGTCCATCATGTGGAAGCTGCCTTCCTAACCATGGGCATATCTA310.16636256305677793No Hit
CATAGAGCGATTTTGGGCTGAGACGATGAGGTTTTCTAAATATACAATCA300.16099602876462382No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCATCCTTTCCCTCACTCTCTCC300.16099602876462382No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTATACGTGAATGTGGATCAGAA290.15562949447246968No Hit
CATAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT290.15562949447246968No Hit
CATAGACCCCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGCGTT290.15562949447246968No Hit
CATAGATGTATACAAGCTGTCACAGACAACAACATGGTTCTACACATAGA280.15026296018031557No Hit
CATAGATACCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA270.14489642588816143No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAT270.14489642588816143No Hit
CATAGAGAGATTTTGGGCTGAGACAATGAGGTTTTCTAAATATACAATCA260.13952989159600732No Hit
CATAGACAGGGAGGCGTATAAGTGATGTACGGTAGCAGAATTACCTCTGG250.13416335730385315No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTT250.13416335730385315No Hit
CATAGAGCTGGCTTCCTAACTTCCAATAACAATGGGCAAGCAATGACAGT250.13416335730385315No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA240.12879682301169904No Hit
CATAGATCATGGGACTTCAGCATGGCCAACACAGTGAAATCCCGTCTCTA240.12879682301169904No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGAGTCACAATCCCCAGAAATGT230.12343028871954491No Hit
CATAGACCAATAAAAGTTGATGGGATGAACCCCAATGGGCAAGCAATGAC230.12343028871954491No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGGTAGCAGAATTACCTCTGGA230.12343028871954491No Hit
CATAGAGCTGGCTTCCTAACTTCCAAAGCTGCCTTCCTAACCATGGGCAT230.12343028871954491No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGTATC210.11269722013523666No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTCATCTACCATTTTCCCCCAAGT200.10733068584308253No Hit
CATAGAGAGATTTTGGGCTGAGACAATGGGGTTTTCTAGATATACACTCA200.10733068584308253No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCCATCTCTA200.10733068584308253No Hit
CATAGATCATGGGACTTCAGCATGGCTAATTTTTGTATTTTTAGTAGAGA190.1019641515509284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)