FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61206
Sequences flagged as poor quality0
Sequence length150
%GC38

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGCTTTTTCTCCAGCCTCCAAGTAATAACCAGGCCCCTCTATGAG58759.598732150442766No Hit
CATAGAAATGATGCTGAAGGGCCTGCCCTCTCTGCTGTTCCTTCTATGAG53378.719733359474562No Hit
CATAGAGAAGACTCCCTCAACCCACCCACAGCCAGGAAAGAATCTATGAG49648.11031598209326No Hit
CATAGACGGATTATTCTCTCCATGGTCTACCAGTTATTAGTTGAATGAGC40966.692154363951247No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG39696.484658366826782No Hit
CATAGACTCATTGCACTTTCCACAACTGTCATTGTCGCTGTCCCATCTAT25114.1025389667679635No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAAGGAAGTTTCTGTGAGATC23883.9015782766395453No Hit
CATAGAAGTCACGAGTTTTGTTGTTGTTCTTCCTTTTCTGCCTTCATCTA20173.295428552756266No Hit
CATAGACTCATTGCACTTTCCACAACTGTGTGCTTGAACCAGATTCTATG16062.623925758912525No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGCCCCAGTGTGAATACTTCT15052.4589092572623596No Hit
CATAGACTCATTGCACTTTCCACAACTGTCCCAACTGTCTCTGAAAAATT13672.233441165898768No Hit
CATAGATCATGGGACTTCAGCATGGCTCAGGTATGTCTTTATTAGCTCTA13242.1631866156912722No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGAAGTGATGGGCTAGATCTATGA10471.710616606215077No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGGGGTAAGGCGTACTGGTCTATGA10221.6697709374897884No Hit
CATAGATGGCCAAGATACGAGCACATACACTGACGCTATACCACACTACA7391.207397967519524No Hit
CATAGATCAAGGAAAACACCAGCCCACGCTGTCCTTCTCTGAATCTATGA7391.207397967519524No Hit
CATAGACCAGCAGACACTCCCATCATCAAGGAAGTTTCTGTGAGATCTAT6781.1077345358298205No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGTTCTGGGCCCCAGTGTGAA6381.0423814658693593No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGCTATACCACACTA6371.0407476391203476No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAGGAACCATGGGAGGTCTAT5830.9525209946737248No Hit
CATAGACCAGCAGACACTCCCATCATCAGGAACCATGGGAGGTCTATGAG5470.8937032317093095No Hit
CATAGACCTCCGACAGTTTTTATGCACCCACAGCCAGGAAAGAATCTATG5420.8855340979642518No Hit
CATAGATGGCCAAGATACGAGCACATCTGTTTCCCCACTCAAATACCATC5360.8757311374701827No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCTGTTTCCCCACTCAAATACCATC5040.8234486815018136No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGCTGAAGTGATGGGCTAGATCTA4850.7924059732705944No Hit
CATAGAGAAGACTCCCTCAACCCACCACACTGACGCTATACCACACTACA4330.7074469823219947No Hit
CATAGACCAGCAGACACTCCCATCATTGCTTCTTGTGGTAACTGGTCTAT4220.6894748880828676No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAAGTTCTGCTTGTGGTGAGTTGAC3880.6339247786164754No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTTATTTTAAAGGACTGGAAGC2860.4672744502172989No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGCTATACCACACT2830.4623729699702644No Hit
CATAGACCAGCAGACACTCCCATCATTTATTTTAAAGGACTGGAAGCCTC2780.45420383622520666No Hit
CATAGAAGCCATGAACACAGGATTGAGGAGCTGAGTCATGGGGTCTATGA2560.41825964774695296No Hit
CATAGATCACGTAGAAACTGGAGAGGCTAATCTGAAATCTTCGTGTTCTA2330.3806816325196876No Hit
CATAGAGTCCAACTATTCCAGCACCACACTGACGATCATTGTTCACTGCA2090.3414697905434108No Hit
CATAGACCAACATTTCTTCTCCCAGGGTGTCTCGCTCTGTCATTGTCGCT2090.3414697905434108No Hit
CATAGATCATGGGACTTCAGCATGGCGATCATTGTTCACTGCAGCCTCTA1880.3071594288141685No Hit
CATAGAGTAGTTAAAACCCACAATGACAGTGTAGCAGCATAATTTCCCAT1850.30225794856713395No Hit
CATAGACGGATTATTCTCTCCATGGTCTCAAACTGCTGGGGTTGCTCTAT1700.2777505473319609No Hit
CATAGAGTAGTTAAAACCCACAATGACAGTGTCAAGGGGTAAGGCGTACT1670.2728490670849263No Hit
CATAGAGCTTGGGTGCGAACATCAACGACATGGGTCTACCAGTTATTAGT1540.25160931934777636No Hit
CATAGAAAATTTGTGATGGTAAATCATGGGACATGCCAGGAATCAATGTT1530.24997549259876484No Hit
CATAGAAATGATGCTGAAGGGCCTGCACACTGACGCTATACCACACTACA1490.24344018560271868No Hit
CATAGATGGCCAAGATACGAGCACATAGAGATCCCACCATTTGCCATCTA1470.24017253210469564No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAGAGAGCAAGGGGTAAGGCGTACT1360.22220043786556873No Hit
CATAGAAATGATGCTGAAGGGCCTGCACTGACGACATGGTTCTACACATA1290.210763650622488No Hit
CATAGAGTCTGAATGGTGGGAGAGTGATAGGCTTAGAGGGCTTGCTCTAT1250.20422834362644185No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGGCTCAGGTATGTCTT1040.16991798189719962No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTGCCTCTAAGTAAACTGAAT1040.16991798189719962No Hit
CATAGACATTTAATCCTCACAATGACCCATACACTGACGATCATTGTTCA990.16174884815214197No Hit
CATAGAGTGCCTGTTTCCTCATTCGTGTCTGTTTCCCCACTCAAATACCA960.15684736790510734No Hit
CATAGAAATGATGCTGAAGGGCCTGCGATGCTGAAGTGATGGGCTAGATC920.1503120609090612No Hit
CATAGAAATGATGCTGAAGGGCCTGCGACATGGTTCTACACATAGAAATG910.14867823416004966No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGACATGGTTCTACA880.14377675391301506No Hit
CATAGAGAAGACTCCCTCAACCCACCACCCACAGCCAGGAAAGAATCTAT880.14377675391301506No Hit
CATAGACCTAAAAGGCTATTGAAAGGAAGGGTAAGAGAGGGTGGAAGGGT870.1421429271640035No Hit
CATAGAGAAGACTCCCTCAACCCACCTGGTCTCATTTATTTTAAAGGACT840.1372414469169689No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAACACTGACGCTATACCACACTACA820.13397379341894586No Hit
CATAGAAATGATGCTGAAGTGATGGGCTAGATCTATGAGACCAAGTCTCT800.13070613992092278No Hit
CATAGAAATGATGCTGAAGGGCCTGCAATAGAAATGATGCTGAAGTGATG760.12417083292487666No Hit
CATAGAAAGGTGCAATCAAGCCAGTTACACTGACGCTATACCACACTACA720.1176355259288305No Hit
CATAGAAATGATGCTGAAGGGCCTGCTAGAAATGATGCTGAAGTGATGGG710.11600169917981897No Hit
CATAGACATTTAATCCTCACAATGACCCATACACTGACGACATGGGTCTA700.11436787243080744No Hit
CATAGACCTCCGACAGTTTTTATGCACTGTCCCAACTGTCTCTGAAAAAT680.11110021893278436No Hit
CATAGATGTGTAGCCTGGGTCTGACAGTTTTTGTGCACCTTCATTGTTGC620.10129725843871515No Hit
CATAGACTCATTGCACTTTCCACAACTGTGTCCCAACTGTCTCTGAAAAA620.10129725843871515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)