FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18491
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA503427.224054945649236No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA304716.478286734086854No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT6463.493591476934725No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT4182.260559190957763No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG3842.0766859553296197No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC3702.0009734465415607No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT3241.7522037748093668No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT2831.5304742847871937No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA2651.4331296306311179No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA2271.2276242496349576No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA2221.2005840679249364No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG2171.1735438862149152No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCTAC1620.8761018874046834No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1620.8761018874046834No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG1610.8706938510626792No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA1530.8274295603266454No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCACCCGCCAC1490.8057974149586286No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG1280.6922286517765399No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT1190.643556324698502No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC1140.6165161429884809No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG970.5245795251744092No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGGACTACAGGTACTCACCAC890.4813152344383754No Hit
CATAGACATGCTAACATTTCTGGGGATAGTAGCAGAGACTTGGTCTCATA810.4380509437023417No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAGAAGTCAAATTGTCC810.4380509437023417No Hit
CATAGAGTTCAAATGGCCAATCAGGTCAACCTGGTGAAACCCCATCTCTA780.4218268346763291No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC760.41101076199232056No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGTGCCTTTGACTGTTTTAGTA760.41101076199232056No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG710.38397058028229947No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG690.37315450759829105No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT610.32989021686225733No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTAGGACTATAGGTACCCGCCAC590.31907414417824886No Hit
CATAGACTGCCTCAGCCTCCTGAGTACCTGGGATTACAGGTGCGCACTAC570.30825807149424045No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG530.28662592612622356No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG530.28662592612622356No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA520.28121788978421935No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACACGCACCAA490.2649937807582067No Hit
CATAGATGAAAAGTCAAGCCAGCACACTCTAGCAGATCACGAGGTGAGGA460.24876967173219403No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT400.21632145368016875No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC390.21091341733816454No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTAGTGAAATTCCTGAGGTCAGG370.20009734465415607No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT310.16764912660213077No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGTGGGCCAC310.16764912660213077No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA300.16224109026012656No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT290.15683305391812233No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTCGTCAAAGATCA280.15142501757611812No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA280.15142501757611812No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC280.15142501757611812No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACCGGCGCGCGCCAC260.14060894489210968No Hit
CATAGACATGCTAACATTTCTGGGGATAGCAGAGACTTGGTCTCATAGAC260.14060894489210968No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA260.14060894489210968No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT260.14060894489210968No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGTGCCAT250.13520090855010544No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA250.13520090855010544No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGGATTATAGGCACCCGCCAC250.13520090855010544No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA250.13520090855010544No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCGTCTCAGCCCAAAATCTC240.12979287220810123No Hit
CATAGACATGCTAACATTTCTGGGGATATAGACATGCTAACATTACTGGG220.1189767995240928No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA220.1189767995240928No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA210.11356876318208858No Hit
CATAGACTTCCTTGCCCCCATTTATTTCATAAATTCAACAGGCTTTCATC210.11356876318208858No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGCGATTACAGGCGCCTGCCAC210.11356876318208858No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCGAAGATCA200.10816072684008438No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA200.10816072684008438No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTAGGACTACAGATGTGCACCAC200.10816072684008438No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA200.10816072684008438No Hit
CATAGAGGTGAGCGGCTGTCTCCAACTCCTGGCCTCAAGCGATCCTCCCA190.10275269049808014No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGCTTGTCAAAGATCA190.10275269049808014No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAAAAACACCAGCCAC190.10275269049808014No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGCACTGGGGACTGTGACTCTG190.10275269049808014No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACTGAACATAGCCTTTGGGGTT190.10275269049808014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)