FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93018
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA4246245.64922918144875No Hit
CATAGACCAGCTTTGCATGAGTGTGGTTAATGAAGCTCTTCCATGTCCCA40044.304543206691179No Hit
CATAGACCTCCTTTCCTCCACGGCAAACACTCAAAACAGCCCTCTATGTG32913.53802489840676No Hit
CATAGATACGATCATAAGGGTGGGGCGAAAGTGATCAGAAGCTCTATGTG26212.817734201982412No Hit
CATAGACCAGCTTTGCATGAGTGTGGGAAGTAGGGAATGATTACAAGTTC15981.7179470640091166No Hit
CATAGACACCATTGGAGACCTGAGCATCCCTCATTACTCTGGTTCTATGT15621.6792448773355693No Hit
CATAGATGGTGGGTTCTGGAGAGAGCATCCCTCATTACTCTGGTTCTATG14431.5513126491646778No Hit
CATAGACACACCCAACTCTGCTCAGTCTGCATAGCCACATCTATGTGTAG11341.2191188802167323No Hit
CATAGACCAGCTTTGCATGAGTGTGGCCTGTGTTCTTTGCATGATCTATG8730.9385280268335161No Hit
CATAGAGATGATGGGATCTTATATTTGGAAAAACTTACGGTAGCAAAGCT6710.7213657571652798No Hit
CATAGACTTTTCCTCCAATATAGCTGCACTTAATCTATGTGTAGAACCAT4760.5117289126835666No Hit
CATAGACCTGACCTCATGATCTGCCTGTGTTCTTTGCATGATCTATGTGT4090.43969984304113185No Hit
CATAGACACACCCAACTCTACTCAGTCTGCATAGCCACATCTATGTGTAG4040.4343245393364725No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGACACTGGGGGCACAAAGTTCT3930.422498871186222No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGACTTGGTCTCATAGAGGGGAG3920.42142381044529015No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGCAGAGACTTGGTCTCATAGAG3390.3644455911759014No Hit
CATAGATACGATCATAAGGGTGGGGCTGGGCTCAGTGGCTTATGCCTGTA3360.36122040895310586No Hit
CATAGATGTGAGCACTACTGATAATCCCTAGAGACTTGGTCTCATAGAGG3230.34724461932099165No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA3210.34509449783912793No Hit
CATAGACTGGCGGTGATTGCTTTCCTCCACGGCAAACACTCAAAACAGCC3140.3375690726526049No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCACGGCAAACACTCAAAACAGCCCT3130.336494011911673No Hit
CATAGAGGGGAGACACTGGGGGCACAAAGTTCTATGTGTAGAACCATGTC2930.3149927970930358No Hit
CATAGATACGATCATAAGGGTGGGGCATGGAGGCTCACACCTGTAATCCT2880.3096174933883764No Hit
CATAGAGGGGAGACACTGGCTATAAGAACTTGGTCTCATAGAGGGGAGAC2850.30639231116558086No Hit
CATAGACCTGACCTCATGATCTGCCTACCTCAGCCTCCCAGATTGCTGGG2840.30531725042464897No Hit
CATAGAGTTATTCAGAGAGAGGGGAAATGAATGTTGGAGAGGCACATCTA2280.2451138489324647No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA2270.24403878819153282No Hit
CATAGACCAAACACAGAAGACATGGCAAACACTCAAAACAGCCCTCTATG2250.2418886667096691No Hit
CATAGAGGGGAGACACTGGCTATAAGAATAGAGGGGAGACACTGGGGGCA2240.24081360596873722No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG2220.23866348448687352No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGGGGAGACACTGGGGGCACA2120.2279128770775549No Hit
CATAGACCAGCTTTGCATGAGTGTGGAAAGCTGTCTGTGTAGGTGATCTA2090.2246876948547593No Hit
CATAGACTTACTGCCCTCACTCCGTCTGCATAGCCACATCTATGTGTAGA2080.22361263411382745No Hit
CATAGAGATGATGGGATCTTATATTTGGAAAAACTACGGTAGCAAAGCTG2070.22253757337289556No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCTTGGCCTCAGTTTCCCCTC2050.22038745189103184No Hit
CATAGAGGTGAGCGGCTGTCTCCAGAAGTCCGCGCAGAGCCTTCAGGTCA1970.21178696596357693No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1920.20641166225891763No Hit
CATAGACTTTTCCTCCAATATAGCTGCACTACTTGGCCTCAGTTTCCCCT1920.20641166225891763No Hit
CATAGATGTTTGAAACTCCTCTACCTAAGACACTGGGGGCACAAAGTTCT1890.20318648003612205No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTTGGCCTCAGTTTCCCCTCCTTCT1890.20318648003612205No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1860.19996129781332644No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCAAGCAGATCTGTGTTCTATGTGTA1810.19458599410866714No Hit
CATAGATGGTGGGTTCTGGAGAGAGGGCGAAAGTGATCAGAAGCTCTATG1790.19243587262680342No Hit
CAGTTTCCCCTCCTTCTATGTGTAGAACCATGTCGTCAGTGTAGATCTCG1750.18813562966307598No Hit
CATAGATGATGTGAAAAGGACCCATGGCGTCAGTGTAGCAAAGCTGCTAT1710.1838353866993485No Hit
CATAGATGATGTGAAAAGGACCCATGGCTCTATGTGTGAGAGAAAACTAC1700.18276032595841665No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1690.1816852652174848No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1670.17953514373562107No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1650.17738502225375735No Hit
CATAGACCAGCTTTGCATGAGTGTGGCATGGAGAAGGGTCTATGTGTAGA1530.164484293362575No Hit
CATAGAGGTGAGCGGCTGTCTCCATAAGTCCGCGCAGAGCCTTCAGGTCA1520.1634092326216431No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGGGGAGACACTGGGGGCACAAA1510.16233417188071125No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTTCTATGTGTAGAACCATGTCGTC1510.16233417188071125No Hit
CATAGACTTACTGCCCTCACTCAGTCTGCATAGCCACATCTATGTGTAGA1470.1580339289169838No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCTGCAGAGACTTGGTCTCAT1370.14728332150766518No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1360.14620826076673332No Hit
CATAGACTTACTGCCCTCACTCCGTCTACGGTAGCAAACACTCAAAACAG1320.14190801780300585No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGAGACTTGGTCTCATAGAGG1310.14083295706207402No Hit
CATAGACCTGACCTCATGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGG1270.13653271409834655No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTAGATTTATCCAGCATGCCCCTC1250.13438259261648283No Hit
CATAGACTTTTCCTCCAATATAGCTGCACTGACTTGGCCTCAGTTTCCCC1250.13438259261648283No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGGGAGACACTGGGGGCACAAAG1250.13438259261648283No Hit
CATAGAGGCTGGGTGACTTGGTGAATGGTAGCAGGACTTGGCCTCAGTTT1200.1290072889118235No Hit
CATAGAGGCTGGGTGACTTGGTGAATGGTTGATGTGGCATGGAGAAGGGT1200.1290072889118235No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA1190.12793222817089164No Hit
CATAGACCTCCTTTCCTCCACGGCAAAGCTGCTATGGGATCTTCTATGTG1190.12793222817089164No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA1180.12685716742995978No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA1180.12685716742995978No Hit
CATAGACTTTTCCTCCAATATAGCTGCACTCTTGGCCTCAGTTTCCCCTC1170.12578210668902792No Hit
CATAGACCAGCTTTGCATGAGTGTGGAGACACTGGGGGCACAAAGTTCTA1130.12148186372530048No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCGCAGAGACTTGGCCTCAGTTTCCC1080.11610656002064117No Hit
CATAGACCTGACCTCATGATCTGCCTACCTCCGCCTCCCAAAGTGCTGGG1030.11073125631598185No Hit
CATAGAGGTGAGCGGCTGTCTCCATGATATGTGTAGAGATTTATCCAGCA1000.10750607409318626No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGACTTGGTCTCATAGAGGGG1000.10750607409318626No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAAAGCCTTCAGGTCA970.10428089187039066No Hit
CATAGAGGCTGGGTGACTTGGTGAATTAGCAGAGACTTGGTCTCATAGAG970.10428089187039066No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA960.10320583112945882No Hit
CATAGACCAGCTTTGCATGAGTGTGGAACCAGTGTAGCAGACCATCTTCT950.10213077038852694No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCTGCGCAGAGCCTTCAGGTCA940.1010557096475951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)