FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24850
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA360514.507042253521126No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA23199.331991951710261No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG10484.217303822937626No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT10364.169014084507042No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT9273.7303822937625757No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA8943.597585513078471No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT8323.3480885311871225No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA7843.1549295774647885No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA6452.595573440643863No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG6062.438631790744467No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCAC6052.4346076458752517No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT5862.358148893360161No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC4591.8470824949698188No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG4271.7183098591549297No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG4221.6981891348088534No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT3731.5010060362173039No Hit
CATAGACATGCTAACATTTCTGGGGATATAGACATGCTAACATTACTGGG2420.9738430583501005No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGTTGGGATTACAGACATGCACCAC2180.8772635814889336No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT1850.744466800804829No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA1770.7122736418511066No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT1670.6720321931589537No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT1640.6599597585513078No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT1510.607645875251509No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA1470.5915492957746479No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT1470.5915492957746479No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG1370.5513078470824949No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATGGAAGTACAC1180.47484909456740443No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG1100.44265593561368205No Hit
CATAGACCAGACTTTTGAAAGAAGCACATCACTTATACGCCTCCCTGTCT1080.4346076458752515No Hit
CATAGAGTTCAAATGGCCAATCAGGTTGTCTGGGTGGTTTCTGTCTATGT910.36619718309859156No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGCAGGAATTAGACTCTTGACA810.32595573440643866No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCAGTCATCACTTAT740.2977867203219316No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG720.289738430583501No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGAGACTTGGTCTCATAGATATG720.289738430583501No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC710.2857142857142857No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA710.2857142857142857No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAGAAGTCAAATTGTCC700.28169014084507044No Hit
CATAGACATGCTAACATTTCTGGGGATTGCTAACATTACTGGGGACTGTG670.26961770623742454No Hit
CATAGACATGCTAACATTTCTGGGGATACTAACATTACTGGGGACTGTGA650.26156941649899396No Hit
CATAGACTGTCATTGCTTGCCCATTGTTTGGAAGTTAGGAAGCCAGCTCT590.23742454728370221No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGACCAAGTTGAATGA590.23742454728370221No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTATGCAAGACTAGGCAATTT590.23742454728370221No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTACTG580.2334004024144869No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA570.22937625754527163No Hit
CATAGAATAGCCAGCAGAAGGAAGCACACAAAAAGGGCATCTATGTGTAG530.21327967806841047No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA510.2052313883299799No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCGGGTTTGTCAAAGATCA510.2052313883299799No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACTGGGGACTGTGACTCTGTTT490.19718309859154928No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA480.19315895372233402No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACAACTGGTGCATACCAC470.1891348088531187No Hit
CATAGACCATCCAGAGGTAATTCTGCTTACGGAGCAGGAATTAGACTCTT470.1891348088531187No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA460.1851106639839034No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGACTAGGCAATTTACAAATCT440.17706237424547283No Hit
CATAGAATAGCCAGCAGAAGGAAGCATGTCGTCAGTGCAGCTTCCACATG430.17303822937625754No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT410.16498993963782696No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGAGGGCTCCAC400.16096579476861167No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCCTGCACCAC390.15694164989939638No Hit
CATAGACTGTCATTGCTTGCCCATTGTCTCATAGACTGTCATTGCTTGCT370.1488933601609658No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA360.1448692152917505No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG360.1448692152917505No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT330.1327967806841046No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA310.12474849094567404No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTACCAT310.12474849094567404No Hit
CATAGACTGTCATTGCTTGCCCATTGACTTGGTCTCATAGACTGTCATTG310.12474849094567404No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATGA310.12474849094567404No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTTAGGAAGCCAGCTCTA310.12474849094567404No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCACGCACCAC290.11670020120724345No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGACCAACTCAGATGG290.11670020120724345No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGACTACAGGCGTGTGCTGC280.11267605633802817No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTCCTCAGGTTTGTCAAAGATCA270.10865191146881288No Hit
CATAGACATGCTAACATTTCTGGGGATATAGACATGCTAACATTTCTGGG250.1006036217303823No Hit
CATAGACCCACTTTCGTGACTTTGTGTACGGTAGCAGAGACTTCGTCTCA250.1006036217303823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)