FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21599
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA16167.481827862401038No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA15076.977174869206908No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT14036.495671095884068No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG10044.6483633501551No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT8794.069632853372841No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA7593.514051576461873No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA6893.1899624982638084No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC5852.7084587249409693No Hit
CATAGAGTTCAAATGGCCAATCAGGTACACTGGGGACTGTGACTCTGTTT5592.5880827816102596No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG5442.5186351219963887No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG4982.3056622991805176No Hit
CATAGACTTCCTTGCCCCCATTTATTACACTGAACATAGCCTTTGGGGTT4271.976943377008195No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT4041.8704569656002594No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT3821.7686003981665817No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG3731.7269318023982592No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT3381.5648872632992268No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA3371.5602574193249688No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT3001.3889531922774203No Hit
CATAGAATCCTTTCCCCATTGCTTGTCACATAGACCAACTCAGATGGGAT2521.166720681513033No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC2401.111162553821936No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG2150.9954164544654845No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA2090.967637390619936No Hit
CATAGAATCCTTTCCCCATTGCTTGTTACGGGAGCAGGAATTAGACTCTT2070.95837770267142No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTTGGAAGTTAGGAAGCCA2060.9537478586971619No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTATGCAAGACTAGGCAATTT1810.8380017593407103No Hit
CATAGATGGAGAGAGTGAGGGAAAGGACATCACTTATACGCCTCCCTGTC1580.7315153479327746No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGAGCAGGAATTAGACTCTT1510.6991064401129682No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA1490.689846752164452No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1090.5046529931941294No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT1050.4861336172970971No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACAAGAGCAGGAATTAGACTCT970.44909486550303257No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA960.4444650215287745No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACCCCTTAAGAAAATTTAATTGTC940.43520533358025837No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA930.43057548960600023No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGTCTGTGACAGCTTGTATACAT840.3889068938376777No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA820.37964720588916157No Hit
CATAGAAGTTCTGATCCACATTCACGTATATAGAGCAGGAATTAGACTCT800.3703875179406454No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTATGGAAGTACACAAAAAG790.3657576739663873No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTGCTCATTATTATTGGATG780.3611278299921293No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAATAGAGCAGGAATTAGACTCT750.3472382980693551No Hit
CATAGAGTTCAAATGGCCAATCAGGTCTATGTGTAGAACCATGTCGTCAG690.3194592342238066No Hit
CATAGAATCCTTTCCCCATTGCTTGTCTGTGACAGCTTCCACATGATGGA670.3101995462752905No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGCTCATTATTATTGGATGG650.3009398583267744No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA630.2916801703782583No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT630.2916801703782583No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC610.2824204824297421No Hit
CATAGACATGCTAACATTTCTGGGGATAACTGGGGACTGTGACTCTGTTT590.273160794481226No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGC580.2685309505069679No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCAAACTGGACAATGAGAG580.2685309505069679No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA540.25001157460993567No Hit
CATAGACATGCTAACATTTCTGGGGATATGCTAACATTACTGGGGACTGT520.2407518866614195No Hit
CATAGACTGTCATTGCTTGCCCATTGGTCTCATAGACTGTCATTGCTTGC510.23612204268716142No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTGG480.22223251076438724No Hit
CATAGACCCACTTTCGTGACTTTGTGGATTGGAACTTTGCCCCAAAAGAG470.21760266679012918No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGCAGGAATTAGACTCTTGACA440.20371313486735498No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT430.19908329089309693No Hit
CATAGACATGCTAACATTTCTGGGGATTGTGACTCTGACTGGGGACTGTG410.18982360294458078No Hit
CATAGACTGTCATTGCTTGCCCATTGGACTGTCATTGCTTGCTCATTATT410.18982360294458078No Hit
CATAGACATGCTAACATTTCTGGGGATTGTGACTCACTGGGGACTGTGAC390.18056391499606464No Hit
CATAGAATCCTTTCCCCATTGCTTGTGACGACATGGAAGTACACAAAAAG380.17593407102180655No Hit
CATAGAATAGCCAGCAGAAGGAAGCATGGAAGTACACAAAAAGGGCATCT380.17593407102180655No Hit
CATAGACTGTCATTGCTTGCCCATTGTTTGGAAGTTAGGAAGCCAGCTCT370.1713042270475485No Hit
CATAGAATCCTTTCCCCATTGCTTGTCCATTCAACTTTCCTTGGCTCTAT350.16204453909903235No Hit
CATAGAATAGCCAGCAGAAGGAAGCACACAAAAAGGGCATCTATGTGTAG350.16204453909903235No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTTAGGAAGCCAGCTCTA350.16204453909903235No Hit
CATAGACTGTCATTGCTTGCCCATTGTCATTGCTTGCTCATTATTATTGG340.1574146951247743No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGCTTGCTCATTATTATTGGATG310.1435251632020001No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA300.138895319227742No Hit
CATAGACATGCTAACATTTCTGGGGATAACATGCTAACATTACTGGGGAC260.12037594333070975No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGGGTTGTCTGGGTGGTTTCTGTC260.12037594333070975No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT250.11574609935645168No Hit
CATAGAATCCTTTCCCCATTGCTTGTCCCTTGGTCTCATAGACTGTCATT230.10648641140793555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)