FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139589
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG4499732.23534805751169No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG79815.71749922988201No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG62234.458087671664672No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA52083.7309530120568235No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC40342.889912528924199No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG32462.325398133090716No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC30842.2093431430843404No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA18501.3253193303197244No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA16951.2142790621037474No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG15501.110402682159769No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC15041.077448796108576No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA13680.9800199156093962No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC13610.9750051938189973No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGAGACCAA12150.8704124250478189No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA10830.7758490998574387No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG10520.7536410462142432No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGGAGGGAAGGAAGGGCAAACTC9100.6519138327518644No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA9010.6454663333070657No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT8960.6418843891710665No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT8290.5938863377486765No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC8280.5931699489214767No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG8100.5802749500318792No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT8000.5731110617598808No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA7930.5680963399694818No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC7830.5609324516974833No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA7200.5157999555838927No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA6610.4735330147791015No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAACCACTTGAACATTGCCTT6430.4606380158895042No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT6230.4463102393455072No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG5100.365358301871924No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGACACTGACGCCATGGGTCC4620.33097163816633113No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGAGGGAAGGAAGGGCAAACTCTA4520.32380774989433264No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC4360.312345528659135No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGGAAAGCAATCACCGCCA4320.3094799733503356No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGAGCATGTTGAGATGAATAATTG4260.3051816403871365No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG4100.2937194191519389No Hit
CATAGAAGATGGTCTGCTACACTGGTTACGGGGGCAGATTAACAGGTCAT3960.283689975571141No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGACATGGTTCTTATAG3830.27437692081754295No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGAGGGAAGGAAGGGCA3760.269362199027144No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT3630.26004914427354586No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA3620.25933275544634604No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCGGAGGGAAGGAAGGGCAA3480.24930331186554813No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAACACTGACGCCATGGGTC3460.24787053421114844No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCTCTCCAGAACCCACCATCTATGA3420.24500497890234904No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCAGGGATTATCAGTAGTGCTCA3250.2328263688399516No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT3180.2278116470495526No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCAAGAATGAGGAGAGTACTACTTTC3010.21563303698715514No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA2910.20846914871515665No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG2910.20846914871515665No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2910.20846914871515665No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC2850.20417081575195753No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC2800.2005888716159583No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTTCATTTCCCCTCTCTCTGAAT2670.19127581686236023No Hit
CATAGAGCTTCTGATCACTTTCGCCCACACTCATGCAAAGCTGGTCTATG2620.18769387272636096No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2570.18411192859036168No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGAGACAGCCGCTCACCTCTA2550.182679150935962No Hit
CATAGACACCTGGATCCTGTGTTGTCTCATTTCCCCTCTCTCTGAATAAC2390.17121692970076438No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGGGACCAA2340.16763498556476514No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT2290.16405304142876587No Hit
CATAGATTCTCAGAGGTTCAATTTGGTTTTCTAATAGTTTTTCCAAATAT2160.1547399866751678No Hit
CATAGATGTGCCTCTCCAACATTCACCAAGTCACCCAGCCTCTATGAGAC2160.1547399866751678No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTACCGTAGACGGAGTGAGGGCAGT2100.15044165371196871No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT2060.1475760984031693No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGTGCAGCTATATTGGAGGA2010.14399415426717005No Hit
CATAGAAGATGGTCTGCTACACTGGTTGGTCTGCCACACTCATGCAAAGC2010.14399415426717005No Hit
CATAGACCCTTCTCCATGCCACATCATCCCATGGGTCCTTTTCACATCAT2000.1432777654399702No Hit
CATAGACACCTGGATCCTGTGTTGTCTGTGTGGAGGGAAGGAAGGGCAAA1920.13754665482237138No Hit
CATAGATGTGGCTATGCAGACTGAGTGGGGGCAGATTAACAGGTCATCTA1870.13396471068637214No Hit
CATAGACCATTTGCCGCGTTCTGAAGACACTGAGCAGAGTTGGGTGTGTC1840.13181554420477257No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1830.13109915537757275No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1770.12680082241437363No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1680.12035332296957497No Hit
CATAGATGTGGCTATGCAGACTGAGTACACTGAGCAGAGTTGGGTGTGTC1660.11892054531517526No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1640.11748776766077557No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTACCGTAGGAGGGAAGGAAGGGCA1640.11748776766077557No Hit
CATAGATGTGGCTATGCAGACTGAGTCAGCATGTTGAGATGAATAATTGA1630.1167713788335757No Hit
CATAGACCATTTGCCGCGTTCTGAAGGCTAGTCCGTCACCCCTAATCTAT1600.11462221235197616No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTGCCATGTCT1480.10602554642557795No Hit
CATAGATCATGCAAAGAACACAGGCCGGGCGCGGTGGCTCACGCCTGTAA1440.10315999111677854No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGCG1420.10172721346237883No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATAA1410.10101082463517899No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1400.10029443580797914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)