FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005804670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005804670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122200
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA4152033.97708674304419No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA72305.916530278232406No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC28242.3109656301145662No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA20731.6963993453355155No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG17531.434533551554828No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT14991.2266775777414074No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA13731.1235679214402619No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT13341.0916530278232406No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA13241.0834697217675942No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT13031.0662847790507366No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT12781.0458265139116203No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT9850.8060556464811784No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA7050.576923076923077No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA5180.4238952536824877No Hit
CATAGAGGTGAGCGGCTGTCTCCATAAGTCCGCGCAGAGCCTTCAGGTCA5020.41080196399345337No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC4990.40834697217675936No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG4970.40671031096563015No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC4750.38870703764320785No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTTCGCGCAGAGCCTTCAGGTCA4490.36743044189852697No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG4240.3469721767594108No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC4240.3469721767594108No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCGTAGCCATGCTGAAGTCCC3840.3142389525368249No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGTACCACAGGCATGTGCCAC3630.29705400981996727No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT3620.29623567921440264No Hit
CATAGAGGTGAGCGGCTGTCTCCACTTGGTCTCATGGAAGTACACAAAAA3470.28396072013093293No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA3410.279050736497545No Hit
CATAGAGGTGAGCGGCTGTCTCCAACACTGGGGACTGTGACTCTGTTTTC3330.2725040916530278No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC3250.26595744680851063No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC3220.26350245499181674No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA3200.2618657937806874No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT3080.2520458265139116No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA3020.24713584288052373No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA3000.24549918166939444No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCAC2980.24386252045826515No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGATGGAAGTACACAAAA2940.24058919803600656No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA2870.234860883797054No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCAC2690.22013093289689037No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG2350.19230769230769232No Hit
CATAGAGGTGAGCGGCTGTCTCCATGATCTATGTGTAGAACCATGCTGAA2310.1890343698854337No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT2150.17594108019639934No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA2140.17512274959083468No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2140.17512274959083468No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG2080.1702127659574468No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCAC2060.1685761047463175No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG2050.16775777414075288No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA2050.16775777414075288No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA2040.16693944353518822No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG1960.16039279869067102No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1950.15957446808510636No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAC1930.15793780687397707No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1920.15711947626841244No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1910.15630114566284778No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA1870.1530278232405892No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGGTCTCATAGACTGTCATTGC1870.1530278232405892No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC1860.15220949263502456No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC1850.1513911620294599No Hit
CATAGACATGCTAACATTTCTGGGGATATGCTAACATTACTGGGGACTGT1810.14811783960720132No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGTGTGTGCCAC1770.1448445171849427No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGTCAG1760.14402618657937807No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCAC1690.13829787234042554No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCAC1690.13829787234042554No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAAATTAGCCAGGC1690.13829787234042554No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT1650.13502454991816695No Hit
CATAGAAGCAGGATGAAAACATGGTACACTGACCAACTCAGATGGGATCC1580.1292962356792144No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1570.12847790507364976No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCAC1560.1276595744680851No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCAC1550.12684124386252046No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG1470.12029459901800328No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCAC1450.11865793780687399No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCAGTGTCATCACTTATACG1440.11783960720130934No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC1420.11620294599018004No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTATGTTGGAAGTTAGGAA1420.11620294599018004No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCAC1370.11211129296235678No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGTGCCAC1360.11129296235679213No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCATGCCAC1340.10965630114566284No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT1310.1072013093289689No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCAC1290.10556464811783961No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA1280.10474631751227496No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG1250.10229132569558103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)